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1. Extending and improving metagenomic taxonomic profiling with uncharacterized species using MetaPhlAn 4

2. Closely related Lak megaphages replicate in the microbiomes of diverse animals

3. The person-to-person transmission landscape of the gut and oral microbiomes

4. Extension of the Segatella copri complex to 13 species with distinct large extrachromosomal elements and associations with host conditions

8. Microbiome connections with host metabolism and habitual diet from 1,098 deeply phenotyped individuals

11. Metagenomic analysis of colorectal cancer datasets identifies cross-cohort microbial diagnostic signatures and a link with choline degradation

12. Plasmid genomic studies of the large phytosphere associated plasmid pQBR103

13. Analysis of 1321 Eubacterium rectale genomes from metagenomes uncovers complex phylogeographic population structure and subspecies functional adaptations

16. Author Correction: Metagenomic analysis of colorectal cancer datasets identifies cross-cohort microbial diagnostic signatures and a link with choline degradation

17. Extending and improving metagenomic taxonomic profiling with uncharacterized species with MetaPhlAn 4

23. Hallstatt miners consumed blue cheese and beer during the Iron Age and retained a non-Westernized gut microbiome until the Baroque period

24. List of Contributors

27. Additional file 1 of Analysis of 1321 Eubacterium rectale genomes from metagenomes uncovers complex phylogeographic population structure and subspecies functional adaptations

28. Distinct Polysaccharide Utilization Profiles of Human Intestinal Prevotella copri Isolates

29. The Prevotella copri Complex Comprises Four Distinct Clades Underrepresented in Westernized Populations

31. Additional file 8: of Genomic and metagenomic insights into the microbial community of a thermal spring

32. Additional file 9: of Genomic and metagenomic insights into the microbial community of a thermal spring

33. Additional file 3: of Genomic and metagenomic insights into the microbial community of a thermal spring

34. Additional file 6: of Genomic and metagenomic insights into the microbial community of a thermal spring

35. Additional file 1: of Profiling microbial strains in urban environments using metagenomic sequencing data

36. Consumer Safety Considerations of Skin and Oral Microbiome Perturbation

37. Distinct polysaccharide growth profiles of human intestinalPrevotella copriisolates

38. The Prevotella copri complex comprises four distinct clades that are underrepresented in Westernised populations

39. Distinct Genetic and Functional Traits of Human Intestinal Prevotella copri Strains Are Associated with Different Habitual Diets

41. Extensive Unexplored Human Microbiome Diversity Revealed by Over 150,000 Genomes from Metagenomes Spanning Age, Geography, and Lifestyle

42. Prevotelladiversity, niches and interactions with the human host

44. Strain-Level Analysis of Mother-to-Child Bacterial Transmission during the First Few Months of Life

45. Mother-to-Infant Microbial Transmission from Different Body Sites Shapes the Developing Infant Gut Microbiome

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