200 results on '"Yang, Jean Y. H."'
Search Results
2. BIDCell: Biologically-informed self-supervised learning for segmentation of subcellular spatial transcriptomics data
3. Atlas-scale single-cell multi-sample multi-condition data integration using scMerge2
4. NEMoE: a nutrition aware regularized mixture of experts model to identify heterogeneous diet-microbiome-host health interactions
5. scJoint integrates atlas-scale single-cell RNA-seq and ATAC-seq data with transfer learning
6. The impact of device-assisted therapies on the gut microbiome in Parkinson’s disease
7. Cross-Platform Omics Prediction procedure: a statistical machine learning framework for wider implementation of precision medicine
8. Benchmarking clustering algorithms on estimating the number of cell types from single-cell RNA-sequencing data
9. Uncovering cell identity through differential stability with Cepo
10. 3D reconstruction of spatial expression
11. Clonal evolution in liver cancer at single-cell and single-variant resolution
12. LC-N2G: a local consistency approach for nutrigenomics data analysis
13. Transcriptional downregulation of MHC class I and melanoma de- differentiation in resistance to PD-1 inhibition
14. Lipidomics Profiling and Risk of Coronary Artery Disease in the BioHEART-CT Discovery Cohort
15. Autoencoder-based cluster ensembles for single-cell RNA-seq data analysis
16. Supplementary Figure Legends from PD-L1 Expression and Immune Escape in Melanoma Resistance to MAPK Inhibitors
17. Table S2 from PD-L1 Expression and Immune Escape in Melanoma Resistance to MAPK Inhibitors
18. Figure S1 from PD-L1 Expression and Immune Escape in Melanoma Resistance to MAPK Inhibitors
19. scSTAR reveals hidden heterogeneity with a real-virtual cell pair structure across conditions in single-cell RNA sequencing data
20. Additional file 1 of NEMoE: a nutrition aware regularized mixture of experts model to identify heterogeneous diet-microbiome-host health interactions
21. Viral Integration Plays a Minor Role in the Development and Prognostication of Oral Squamous Cell Carcinoma
22. Scalable workflow for characterization of cell-cell communication in COVID-19 patients
23. Deep Multimodal Graph-Based Network for Survival Prediction from Highly Multiplexed Images and Patient Variables
24. Whole genome duplication in oral squamous cell carcinoma in patients younger than 50 years: implications for prognosis and adverse clinicopathological factors
25. The Gut Microbiome in Parkinson’s Disease: A Longitudinal Study of the Impacts on Disease Progression and the Use of Device-Assisted Therapies
26. Nutritional Intake and Gut Microbiome Composition Predict Parkinson’s Disease
27. Computational approaches for direct cell reprogramming: from the bulk omics era to the single cell era
28. Additional file 1 of Benchmarking clustering algorithms on estimating the number of cell types from single-cell RNA-sequencing data
29. Additional file 2 of Benchmarking clustering algorithms on estimating the number of cell types from single-cell RNA-sequencing data
30. scREMOTE: Using multimodal single cell data to predict regulatory gene relationships and to build a computational cell reprogramming model
31. SurvBenchmark: comprehensive benchmarking study of survival analysis methods using both omics data and clinical data
32. Oral Squamous Cell Carcinoma in Young Patients Show Higher Rates of EGFR Amplification: Implications for Novel Personalized Therapy
33. A field guide to cultivating computational biology
34. Additional file 2 of Clonal evolution in liver cancer at single-cell and single-variant resolution
35. Additional file 1 of Clonal evolution in liver cancer at single-cell and single-variant resolution
36. The impact of device-assisted therapies on the gut microbiome in Parkinson’s disease
37. Genome-wide analysis in Drosophila reveals diet-by-gene interactions and uncovers diet-responsive genes
38. Single-cell and single-variant resolution analysis of clonal evolution in human liver cancer
39. Mutational and transcriptomic landscapes of a rare human prostate basal cell carcinoma
40. Additional file 1 of LC-N2G: a local consistency approach for nutrigenomics data analysis
41. Analysis of the Whole-Exome Sequencing of Tumor and Circulating Tumor DNA in Metastatic Melanoma
42. Single-cell dissection of a rare human prostate basal cell carcinoma
43. Evaluating stably expressed genes in single cells
44. Diagonal Discriminant Analysis With Feature Selection for High-Dimensional Data
45. Single-Cell RNA-Seq Reveals Naïve B cells Associated with Better Prognosis of HCC
46. AdaSampling for Positive-Unlabeled and Label Noise Learning With Bioinformatics Applications
47. bcGST—an interactive bias-correction method to identify over-represented gene-sets in boutique arrays
48. DCARS: differential correlation across ranked samples
49. Single-cell RNA-Seq analysis reveals dynamic trajectories during mouse liver development
50. PD-L1 Expression and Immune Escape in Melanoma Resistance to MAPK Inhibitors
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