21 results on '"needle nematodes"'
Search Results
2. Morphological Characteristics and Molecular Analysis of Newly Recorded Longidorus moesicus Lamberti, Choleva & Agostinelli, 1983 (Dorylaimida: Longidoridae) From Türkiye.
- Author
-
ÇELİK, Serkan and AKYAZI, Faruk
- Subjects
SOIL sampling ,NEMATODES ,FLOTATION - Abstract
Copyright of Academic Journal of Agriculture / Akademik Ziraat Dergisi is the property of University of Ordu, Faculty of Agriculture, Academic Journal of Agriculture and its content may not be copied or emailed to multiple sites or posted to a listserv without the copyright holder's express written permission. However, users may print, download, or email articles for individual use. This abstract may be abridged. No warranty is given about the accuracy of the copy. Users should refer to the original published version of the material for the full abstract. (Copyright applies to all Abstracts.)
- Published
- 2023
- Full Text
- View/download PDF
3. First report of Longidorus leptocephalus Hooper, 1961 (Nematoda: Longidoridae) from Greece
- Author
-
Clavero-Camacho Ilenia, Cantalapiedra-Navarrete Carolina, Kormpi Maria, Palomares-Rius Juan E., Tzortzakakis Emmanuel A., Castillo Pablo, and Archidona-Yuste Antonio
- Subjects
cytochrome oxidase c subunit 1 ,d2-d3 of 28s rdna ,description ,its1 rdna ,needle nematodes ,taxonomy ,Biology (General) ,QH301-705.5 - Abstract
Longidorid nematodes comprise more than 500 species, and Longidorus and Xiphinema are the most diversified, prevalent, and cosmopolitan genera within plant-parasitic nematodes. The genus Longidorus comprise a group of species, some of which are vectors of plant viruses. New sampling for needle nematodes was carried out in a grapevine area in Thessaloniki, northern Greece, and one nematode species of Longidorus (L. leptocephalus) was recovered. Nematodes were extracted from soil samples by modified sieving and a decanting method. Extracted specimens were processed using glycerol, mounted on permanent slides, and subsequently identified morphologically. Nematode DNA was extracted from individual, live specimens, and PCR (Polymerase Chain Reaction) assays were performed for D2-D3 expansion segments of 28S rRNA, ITS1 rRNA, and partial mitochondrial COI regions. Morphology and morphometric data obtained from this population were consistent with the original description and reported populations of L. leptocephalus. To our knowledge, this is the first report of L. leptocephalus in Greece and the second in the Mediterranean Basin after the record of the species from Slovenia, extending the geographical distribution of this species in Europe.
- Published
- 2022
- Full Text
- View/download PDF
4. Morphological and molecular characterisation of Longidorus sabalanicus n. sp. (Nematoda: Longidoridae) from Iran.
- Author
-
Asgari, Mohsen, Eskandari, Ali, Castillo, Pablo, and Palomares-Rius, Juan E.
- Abstract
Longidorus sabalanicus n. sp. is described and illustrated based on morphological, morphometric and molecular studies of two populations from north-western Iran. It was recovered from the rhizosphere of meadow grasses in East Azarbaijan province and the rhizosphere of Astragalus sp. in Zanjan province. The new species is characterised by having a medium sized body, 3.8–5.1 mm in females and 3.6–4.7 in males; lip region anteriorly flattened, laterally rounded, set off from body contour by a slight depression; amphidial fovea pocket-shaped, without basal lobes; guiding ring at 25–30 μm from anterior end; odontostyle moderately long, 73.0–85.5 μm and odontophore weakly developed, 50.0–67.4 μm long; female reproductive system containing sperm, vulva located at 50–54% of body length; tail bluntly conoid, 41.0–55.0 μm long; males common in both populations, with 54.0–68.5 μm long spicules and seven to ten ventromedian precloacal supplements anterior to the adanal pair; and four juvenile developmental stages present. The alpha-numeric codes for identifying the new species are: A23-B2-C2-D3-E1-F2-G1-H12-I2-J1-K7. Morphologically, the new species most closely resembles to L. moniloides, L. rotundicaudatus, L. tabrizicus, L. artemisiae, L. asiaticus, L. behshahrensis, and L. elongatus. Morphological and morphometric differences of Longidorus sabalanicus n. sp. and the aforementioned species are discussed. In addition to morphological and morphometric data, molecular comparison analyses based on partial 18S rRNA, D2-D3 expansion segments of 28S rRNA and ITS1 region sequences, indicate that L. sabalanicus n. sp. is separated from other species and it is related phylogenetically with L. behshahrensis. [ABSTRACT FROM AUTHOR]
- Published
- 2022
- Full Text
- View/download PDF
5. The first record and description of male of Paralongidorus rex (Nematoda, Longidoridae) from Ukraine with comments on female uterine eggs morphology
- Author
-
S. Susulovska
- Subjects
longidoridae ,needle nematodes ,morphology ,paralongidorus rex ,ukraine ,Zoology ,QL1-991 - Abstract
This paper presents the first report of male specimen of Paralongidorus rex Andrássy, 1986. It was found in the population collected from the rhizosphere of Acer platanoides in Lviv, Ukraine. Morphology of male, especially structure of spicules and arrangement of supplements, described in details and compared with most closely related species. It can be distinguished from all other similar species by longer spicules. Morphometric data on females and male of this population are provided. Morphology of female genital tract described in details. Uterine eggs are detected in genital tract of females for the first time and their morphometrics are provided. During current research, clearly expressed seasonal reproduction of this parthenogenetic species on the territory of Western Ukraine was revealed. Uterine eggs were observed only in genital tracts of females from the soil samples collected in the first decade of May but no female specimens with eggs were detected in numerous P. rex populations collected during summer period (June-September).
- Published
- 2020
- Full Text
- View/download PDF
6. THE FIRST RECORD AND DESCRIPTION OF MALE OF PARALONGIDORUS REX (NEMATODA, LONGIDORIDAE) FROM UKRAINE WITH COMMENTS ON FEMALE UTERINE EGGS MORPHOLOGY.
- Author
-
Susulovska, S.
- Subjects
NEMATODES ,RHIZOSPHERE ,SUMMER ,DATA analysis - Abstract
This paper presents the first report of male specimen of Paralongidorus rex Andrássy, 1986. It was found in the population collected from the rhizosphere of Acer platanoides in Lviv, Ukraine. Morphology of male, especially structure of spicules and arrangement of supplements, is described in details and compared with most closely related species. It can be distinguished from all other similar species by longer spicules. Morphometric data on females and male of this population are provided. Morphology of female genital tract is described in details. Uterine eggs are detected in genital tract of females for the first time and their morphometrics are provided. During current research, clearly expressed seasonal reproduction of this parthenogenetic species on the territory of Western Ukraine was revealed. Uterine eggs were observed only in genital tracts of females from the soil samples collected in the first decade of May but no female specimens with eggs were detected in numerous P. rex populations collected during summer period (June-September). [ABSTRACT FROM AUTHOR]
- Published
- 2020
- Full Text
- View/download PDF
7. First Reports, Morphological, and Molecular Characterization of Longidorus caespiticola and Longidorus poessneckensis (Nematoda: Longidoridae) from Ukraine.
- Author
-
SUSULOVSKA, SOLOMIA, CASTILLO, PABLO, and ARCHIDONA-YUSTE, ANTONIO
- Subjects
- *
LONGIDORIDAE , *DAGGER nematodes , *NEMATODES , *GLYCERIN , *DNA - Abstract
Seven needle nematode species of the genus Longidorus have been reported in Ukraine. Nematological surveys for needle nematodes were carried out in Ukraine between 2016 and 2017 and two nematode species of Longidorus (L. caespiticola and L. poessneckensis) were collected from natural and anthropogenically altered habitats on the territory of Opillia and Zakarpattia in Ukraine. Nematodes were extracted from 500 cm3 of soil by modified sieving and decanting method. Extracted specimens were processed to glycerol and mounted on permanent slides and subsequently identified morphologically and molecularly. Nematode DNA was extracted from single individuals and PCR assays were conducted as previously described for D2-D3 expansion segments of 28S rRNA. Sequence alignments for D2-D3 from L. caespiticola showed 97%-99% similarity to other sequences of L. caespiticola deposited in GenBank from Belgium, Bulgaria, Czech Republic, Russia, Slovenia, and Scotland. Similarly, D2-D3 sequence alignments from L. poessneckensis, showed 99% to other sequences of L. poessneckensis deposited in GenBank from Slovakia and Czech Republic. Morphology, morphometry, and molecular data obtained from these samples were consistent with L. caespiticola and L. poessneckensis identification. To our knowledge, these are the first reports of L. caespiticola and L. poessneckensis in Ukraine, extending the geographical distribution of these species. [ABSTRACT FROM AUTHOR]
- Published
- 2017
- Full Text
- View/download PDF
8. First Report of Longidorus Leptocephalus Hooper, 1961 (Nematoda: Longidoridae) from Greece
- Author
-
Consejo Superior de Investigaciones Científicas (España), Clavero-Camacho, Ilenia, Cantalapiedra-Navarrete, C., Kormpi, Maria, Palomares Rius, Juan E., Tzortzakakis, E. A., Castillo, Pablo, Archidona-Yuste, Antonio, Consejo Superior de Investigaciones Científicas (España), Clavero-Camacho, Ilenia, Cantalapiedra-Navarrete, C., Kormpi, Maria, Palomares Rius, Juan E., Tzortzakakis, E. A., Castillo, Pablo, and Archidona-Yuste, Antonio
- Abstract
Longidorid nematodes comprise more than 500 species, and Longidorus and Xiphinema are the most diversified, prevalent, and cosmopolitan genera within plant-parasitic nematodes. The genus Longidorus comprise a group of species, some of which are vectors of plant viruses. New sampling for needle nematodes was carried out in a grapevine area in Thessaloniki, northern Greece, and one nematode species of Longidorus (L. leptocephalus) was recovered. Nematodes were extracted from soil samples by modified sieving and a decanting method. Extracted specimens were processed using glycerol, mounted on permanent slides, and subsequently identified morphologically. Nematode DNA was extracted from individual, live specimens, and PCR (Polymerase Chain Reaction) assays were performed for D2-D3 expansion segments of 28S rRNA, ITS1 rRNA, and partial mitochondrial COI regions. Morphology and morphometric data obtained from this population were consistent with the original description and reported populations of L. leptocephalus. To our knowledge, this is the first report of L. leptocephalus in Greece and the second in the Mediterranean Basin after the record of the species from Slovenia, extending the geographical distribution of this species in Europe.
- Published
- 2022
9. First Reports, Morphological, and Molecular Characterization of Longidorus caespiticola and Longidorus poessneckensis (Nematoda: Longidoridae) from Ukraine
- Author
-
SOLOMIA SUSULOVSKA, PABLO CASTILLO, and ANTONIO ARCHIDONA-YUSTE
- Subjects
28S rDNA ,D2–D3 segments ,detection ,needle nematodes ,taxonomy ,Biology (General) ,QH301-705.5 - Published
- 2017
- Full Text
- View/download PDF
10. Morphological and molecular characterisation of Longidorus pauli (Nematoda: Longidoridae), first report from Greece
- Author
-
Pablo Castillo, Parthenopi Ralli, Ilenia Clavero-Camacho, Emmanuel A. Tzortzakakis, Juan E. Palomares-Rius, Antonio Archidona-Yuste, Carolina Cantalapiedra-Navarrete, and Consejo Superior de Investigaciones Científicas (España)
- Subjects
0106 biological sciences ,L. pisi ,Pcr assay ,010607 zoology ,01 natural sciences ,Mediterranean Basin ,ITS1 rRNA ,28S ribosomal RNA ,D2-D3 of 28S rRNA ,Botany ,Longidorus ,Longidoridae ,lcsh:QH301-705.5 ,Taxonomy ,Needle nematodes ,Cytochrome oxidase c subunit 1 ,biology ,Description ,Arts & Humanities ,Ribosomal RNA ,biology.organism_classification ,L. pauli ,Nematode ,lcsh:Biology (General) ,Taxonomy (biology) ,010606 plant biology & botany - Abstract
Sampling for needle nematodes was carried out in a grapevine area in Thessaloniki, North Greece and two nematode species of Longidorus (L. pauli and L. pisi) were collected. Nematodes were extracted from 500 cm3 of soil by modified sieving and decanting method, processed to glycerol and mounted on permanent slides, and subsequently identified morphologically and molecularly. Nematode DNA was extracted from single individuals and PCR assays were conducted to amplify D2-D3 expansion segments of 28S rRNA, ITS1 rRNA, and partial mitochondrial coxI regions. Morphology and morphometry data obtained from these populations were consistent with L. pauli and L. pisi identifications. To our knowledge, this is the first report of L. pauli for Greece, and the second world report after the original description from Idleb, Syria, extending the geographical distribution of this species in the Mediterranean Basin., Spanish authors acknowledge grant 201740E042, ‘Análisis de diversidad molecular, barcoding, y relaciones filogenéticas de nematodos fitoparásitos en cultivos mediterráneos’ from Spanish National Research Council (CSIC).
- Published
- 2021
11. Morphological and molecular characterisation of Longidorus sabalanicus n. sp. (Nematoda: Longidoridae) from Iran
- Author
-
Mohsen Asgari, Ali Eskandari, Pablo Castillo, and Juan E. Palomares-Rius
- Subjects
Needle nematodes ,Plant Science ,Horticulture ,rRNA ,Agronomy and Crop Science ,Phylogeny ,Taxonomy ,New species - Abstract
Longidorus sabalanicus n. sp. is described and illustrated based on morphological, morphometric and molecular studies of two populations from north-western Iran. It was recovered from the rhizosphere of meadow grasses in East Azarbaijan province and the rhizosphere of Astragalus sp. in Zanjan province. The new species is characterised by having a medium sized body, 3.8–5.1 mm in females and 3.6–4.7 in males; lip region anteriorly flattened, laterally rounded, set off from body contour by a slight depression; amphidial fovea pocket-shaped, without basal lobes; guiding ring at 25–30 μm from anterior end; odontostyle moderately long, 73.0–85.5 μm and odontophore weakly developed, 50.0–67.4 μm long; female reproductive system containing sperm, vulva located at 50–54% of body length; tail bluntly conoid, 41.0–55.0 μm long; males common in both populations, with 54.0–68.5 μm long spicules and seven to ten ventromedian precloacal supplements anterior to the adanal pair; and four juvenile developmental stages present. The alpha-numeric codes for identifying the new species are: A23-B2-C2-D3-E1-F2-G1-H12-I2-J1-K7. Morphologically, the new species most closely resembles to L. moniloides, L. rotundicaudatus, L. tabrizicus, L. artemisiae, L. asiaticus, L. behshahrensis, and L. elongatus. Morphological and morphometric differences of Longidorus sabalanicus n. sp. and the aforementioned species are discussed. In addition to morphological and morphometric data, molecular comparison analyses based on partial 18S rRNA, D2-D3 expansion segments of 28S rRNA and ITS1 region sequences, indicate that L. sabalanicus n. sp. is separated from other species and it is related phylogenetically with L. behshahrensis.
- Published
- 2022
12. First report of Longidorus leptocephalus Hooper, 1961 (Nematoda: Longidoridae) from Greece
- Author
-
Ilenia Clavero-Camacho, Carolina Cantalapiedra-Navarrete, Maria Kormpi, Juan E. Palomares-Rius, Emmanuel A. Tzortzakakis, Pablo Castillo, Antonio Archidona-Yuste, and Consejo Superior de Investigaciones Científicas (España)
- Subjects
Needle nematodes ,Cytochrome oxidase c subunit 1 ,D2-D3 of 28S rDNA ,Description ,ITS1 rDNA ,Taxonomy - Abstract
Longidorid nematodes comprise more than 500 species, and Longidorus and Xiphinema are the most diversified, prevalent, and cosmopolitan genera within plant-parasitic nematodes. The genus Longidorus comprise a group of species, some of which are vectors of plant viruses. New sampling for needle nematodes was carried out in a grapevine area in Thessaloniki, northern Greece, and one nematode species of Longidorus (L. leptocephalus) was recovered. Nematodes were extracted from soil samples by modified sieving and a decanting method. Extracted specimens were processed using glycerol, mounted on permanent slides, and subsequently identified morphologically. Nematode DNA was extracted from individual, live specimens, and PCR (Polymerase Chain Reaction) assays were performed for D2-D3 expansion segments of 28S rRNA, ITS1 rRNA, and partial mitochondrial COI regions. Morphology and morphometric data obtained from this population were consistent with the original description and reported populations of L. leptocephalus. To our knowledge, this is the first report of L. leptocephalus in Greece and the second in the Mediterranean Basin after the record of the species from Slovenia, extending the geographical distribution of this species in Europe., Spanish authors acknowledge grant 201740E042, ‘‘Análisis de diversidad molecular, barcoding, y relaciones filogenéticas de nematodos fitoparásitos en cultivos mediterráneos’’ from the Spanish National Research Council (CSIC).
- Published
- 2022
13. Morphological and molecular characterisation of Longidorus pauli (Nematoda: Longidoridae), first report from Greece
- Author
-
Tzortzakakis, E.A., Clavero-Camacho, I., Cantalapiedra-Navarrete, C., Ralli, P., Palomares-Rius, J.E., Castillo, P., Archidona-Yuste, Antonio, Tzortzakakis, E.A., Clavero-Camacho, I., Cantalapiedra-Navarrete, C., Ralli, P., Palomares-Rius, J.E., Castillo, P., and Archidona-Yuste, Antonio
- Abstract
Sampling for needle nematodes was carried out in a grapevine area in Thessaloniki, North Greece and two nematode species of Longidorus (L. pauli and L. pisi) were collected. Nematodes were extracted from 500 cm3 of soil by modified sieving and decanting method, processed to glycerol and mounted on permanent slides, and subsequently identified morphologically and molecularly. Nematode DNA was extracted from single individuals and PCR assays were conducted to amplify D2-D3 expansion segments of 28S rRNA, ITS1 rRNA, and partial mitochondrial coxI regions. Morphology and morphometry data obtained from these populations were consistent with L. pauli and L. pisi identifications. To our knowledge, this is the first report of L. pauli for Greece, and the second world report after the original description from Idleb, Syria, extending the geographical distribution of this species in the Mediterranean Basin.
- Published
- 2021
14. Morphological and molecular characterisation of Longidorus pauli (Nematoda: Longidoridae), first report from Greece
- Author
-
Consejo Superior de Investigaciones Científicas (España), Tzortzakakis, E. A., Clavero-Camacho, Ilenia, Cantalapiedra-Navarrete, C., Ralli, Parthenopi, Palomares Rius, Juan E., Castillo, Pablo, Archidona-Yuste, Antonio, Consejo Superior de Investigaciones Científicas (España), Tzortzakakis, E. A., Clavero-Camacho, Ilenia, Cantalapiedra-Navarrete, C., Ralli, Parthenopi, Palomares Rius, Juan E., Castillo, Pablo, and Archidona-Yuste, Antonio
- Abstract
Sampling for needle nematodes was carried out in a grapevine area in Thessaloniki, North Greece and two nematode species of Longidorus (L. pauli and L. pisi) were collected. Nematodes were extracted from 500 cm3 of soil by modified sieving and decanting method, processed to glycerol and mounted on permanent slides, and subsequently identified morphologically and molecularly. Nematode DNA was extracted from single individuals and PCR assays were conducted to amplify D2-D3 expansion segments of 28S rRNA, ITS1 rRNA, and partial mitochondrial coxI regions. Morphology and morphometry data obtained from these populations were consistent with L. pauli and L. pisi identifications. To our knowledge, this is the first report of L. pauli for Greece, and the second world report after the original description from Idleb, Syria, extending the geographical distribution of this species in the Mediterranean Basin.
- Published
- 2021
15. Description of Longidorus bordonensis sp. nov. from Portugal, with systematics and molecular phylogeny of the genus (Nematoda, Longidoridae)
- Author
-
School of Plant and Environmental Sciences, Gutierrez-Gutierrez, Carlos, Santos, Margarida Teixeira, Inacio, Maria Lurdes, Eisenback, Jonathan D., Mota, Manuel, School of Plant and Environmental Sciences, Gutierrez-Gutierrez, Carlos, Santos, Margarida Teixeira, Inacio, Maria Lurdes, Eisenback, Jonathan D., and Mota, Manuel
- Abstract
The genus Longidorus currently comprises 176 species of polyphagous plant ectoparasites, including eight species that vector nepo-viruses. Longidorus is one of the most difficult genera to accurately identify species because of the similar morphology and overlapping measurements and ratios among species. Sequences of ribosomal RNA (rRNA)-genes are a powerful level-species diagnostic tool for the genus Longidorus. From 2015 to 2019, a nematode survey was conducted in vineyards and agro-forest environments in Portugal. The populations of Longidorus spp. were characterized through an integrative approach based on morphological data and molecular phylogenetic analysis from rRNA genes (D2-D3 expansion segments of the 28S, ITS1, and partial 18S), including the topotype of L. vinearum. Longidorus bordonensis sp. nov., a didelphic species recovered from the rhizosphere of grasses, is described and illustrated. Longidorus vineacola, with cork oak and wild olive as hosts, is also characterized. This is the first time that L. wicuolea, from cork oak, is reported for Portugal. Bayesian inference (BI) phylogenetic trees for these three molecular markers established phylogenetic relationships among the new species with other Longidorus spp. Phylogenetic trees indicated that i) L. bordonensis sp. nov. is clustered together with other Longidorus spp. and forms a sister clade with L. pini and L. carpetanensis, sharing a short body and odontostyle length, and elongate to conical female tail, and ii) all the other species described and illustrated are phylogenetically associated, including the topotype isolate of L. vinearum.
- Published
- 2020
16. Molecular characterisation and diagnostics of some Longidorus species (Nematoda: Longidoridae) from Russia and other countries using rRNA genes.
- Author
-
Subbotin, Sergei, Rogozhin, Eugene, and Chizhov, Vladimir
- Abstract
The needle nematodes of the genus Longidorus can cause diseases of various crops and trees, and are comprised of more than 150 valid species. Eleven valid and six unidentified species of the genus Longidorus collected in different regions of Russia, two states of USA, Germany, New Zealand and Ukraine were molecularly characterized using analysis of the partial 18S rRNA and the D2-D3 expansion segments of the 28S rRNA gene sequences. Fifty-four partial 28S rRNA and fifteen partial 18S rRNA gene sequences were obtained for the present study. Using molecular criteria, we confirmed the morphological identification and distinguished between the following species: L. aetnaeus, L. africanus, L. andalusicus, L. artemisiae, L. caespiticola, L. distinctus, L. elongatus, L. euonymus, L. intermedius, L. leptocephalus and L. lignosus. Two longidorid populations from Russia and four from California were not identified to a species level. We obtained the full length D2-D3 of 28S rRNA gene sequence from several freshly-collected L. artemisiae samples. We confirmed the identity of the D2 region of 28S rRNA gene sequence with a short D2 of 28S rRNA gene fragment sequence previously obtained from formalin-fixed nematodes embedded in the L. artemisiae paratype slides. Longidorus lignosus was molecularly characterized and L. aetnaeus was reported from Russia for the first time. PCR-D2-D3-RFLP diagnostic profiles generated by five restriction enzymes: AluI, HinfI, Bsp143I, Tru1I and RsaI are presented for sixteen Longidorus species. [ABSTRACT FROM AUTHOR]
- Published
- 2014
- Full Text
- View/download PDF
17. Zoosystematics and Evolution
- Author
-
Margarida Teixeira Santos, Jonathan D. Eisenback, Maria L. Inácio, Manuel Mota, Carlos Gutiérrez-Gutiérrez, and School of Plant and Environmental Sciences
- Subjects
0106 biological sciences ,Systematics ,D2-D3 expansion segments of large ribosomal subunit 28S ,Nematoda ,needle nematodes ,Genomic data ,Dorylaimida ,Bayesian inference ,010607 zoology ,Bayesian inference D2–D3 expansion segments of large ribosomal subunit 28S genomic data needle nematodes internal transcribed spacer 1 partial small ribosomal subunit ,Adenophorea ,01 natural sciences ,partial small ribosomal subunit ,Genus ,Animalia ,Longidorus ,Longidoridae ,D2–D3 expansion segments of large ribosomal subunit 28S ,internal transcribed spacer 1 ,lcsh:QH301-705.5 ,Ecology, Evolution, Behavior and Systematics ,biology ,biology.organism_classification ,language.human_language ,Geography ,lcsh:Biology (General) ,Evolutionary biology ,Molecular phylogenetics ,language ,genomic data ,Portuguese ,010606 plant biology & botany - Abstract
The genus Longidorus currently comprises 176 species of polyphagous plant ectoparasites, including eight species that vector nepo-viruses. Longidorus is one of the most difficult genera to accurately identify species because of the similar morphology and overlapping measurements and ratios among species. Sequences of ribosomal RNA (rRNA)-genes are a powerful level-species diagnostic tool for the genus Longidorus. From 2015 to 2019, a nematode survey was conducted in vineyards and agro-forest environments in Portugal. The populations of Longidorus spp. were characterized through an integrative approach based on morphological data and molecular phylogenetic analysis from rRNA genes (D2-D3 expansion segments of the 28S, ITS1, and partial 18S), including the topotype of L. vinearum. Longidorus bordonensis sp. nov., a didelphic species recovered from the rhizosphere of grasses, is described and illustrated. Longidorus vineacola, with cork oak and wild olive as hosts, is also characterized. This is the first time that L. wicuolea, from cork oak, is reported for Portugal. Bayesian inference (BI) phylogenetic trees for these three molecular markers established phylogenetic relationships among the new species with other Longidorus spp. Phylogenetic trees indicated that i) L. bordonensis sp. nov. is clustered together with other Longidorus spp. and forms a sister clade with L. pini and L. carpetanensis, sharing a short body and odontostyle length, and elongate to conical female tail, and ii) all the other species described and illustrated are phylogenetically associated, including the topotype isolate of L. vinearum. Foundation for Science and Technology (Portugal)Portuguese Foundation for Science and Technology [UID/AGR/00115/2019] This research was financially supported by National Funds through Foundation for Science and Technology under the project UID/AGR/00115/2019 (Portugal). We thank M.I. Ferreira and G. Albarran from Instituto de Ciencias Agrarias e Ambientais Mediterranicas, Universidade of Evora for their excellent technical assistance.
- Published
- 2020
18. Molecular phylogeny of the nematode genus Longidorus ( Nematoda: Longidoridae) with description of three new species.
- Author
-
Gutiérrez-Gutiérrez, Carlos, Cantalapiedra-Navarrete, Carolina, Montes-Borrego, Miguel, Palomares-Rius, Juan E., and Castillo, Pablo
- Subjects
- *
MOLECULAR phylogeny , *NEMATODES , *LONGIDORIDAE , *ECTOPARASITES , *ANIMAL nutrition , *PHENOTYPIC plasticity , *COMPARATIVE studies , *ANIMAL behavior - Abstract
The phylum Nematoda includes the genus Longidorus, a remarkable group of invertebrates that are polyphagous root-ectoparasites of many plants including various agricultural crops and trees. Damage is caused by direct feeding on root cells as well as by transmitting nepoviruses. Species discrimination in Longidorus is complicated by phenotypic plasticity (intraspecific variability and minor interspecific differences) leading to potential misidentification. We conducted nematode surveys in cultivated and natural environments in southern Spain that detected 11 species of Longidorus. We developed a comparative study amongst these related species by considering morphological and morphometric features together with molecular data from nuclear ribosomal RNA genes [ D2- D3 expansion segments of large ribosomal subunit (28 S), internal transcribed spacer 1 ( ITS1), and partial small ribosomal subunit ( 18S)]. The results of our molecular and phylogenetic analyses confirmed the morphological hypotheses and allowed the delimitation and discrimination of three new species of the genus, described herein as Longidorus baeticus sp. nov., Longidorus oleae sp. nov., and Longidorus andalusicus sp. nov., and eight known species ( Longidorus alvegus, Longidorus crataegi, Longidorus fasciatus, Longidorus intermedius, Longidorus iuglandis, Longidorus magnus, Longidorus rubi, and Longidorus vineacola). Phylogenetic analyses of Longidorus spp. based on the three molecular markers resulted in a general consensus of these species grouping, as lineages were maintained for the majority of species (i.e. species with a conoid-rounded lip region, amphidial fovea asymmetrically bilobed, female tail bluntly rounded), but not in some others (i.e. positions of L. crataegi, L. intermedius, and L. rubi were quite variable). To date, this is the most complete phylogenetic analysis for Longidorus and Paralongidorus species, with the highest number of species included. No correspondence between phylogenetic trees and morphological characters was found for ribosomal markers, with the exception of amphidial shape. Thus, polyphasic identification, based on integration of molecular analysis with morphology, is a tool beyond doubt in Longidorus identification. © 2013 The Linnean Society of London [ABSTRACT FROM AUTHOR]
- Published
- 2013
- Full Text
- View/download PDF
19. Molecular and morphological characterisation of Xiphinema granatum n. sp. and Longidorus pisi Edward, Misra & Singh, 1964 (Dorylaimida: Longidoridae) from Iran.
- Author
-
PEDRAM, Majid, POURJAM, Ebrahim, PALOMARES-RIUS, Juan E., GHAEMI, Razieh, CANTALAPIEDRA-NAVARRETE, Carolina, and CASTILLO, Pablo
- Subjects
- *
DAGGER nematodes , *MOLECULAR genetics , *MORPHOLOGY , *MORPHOMETRICS - Abstract
Xiphinema granatum n. sp. from pomegranate in Saveh, Markazi province, central Iran, is described and illustrated. The new species belongs to species group 8 of the genus Xiphinema sensu Loof & Luc, 1990. The new species is characterised by a body 3.5-4.1 mm long, 37-49 µm diam., odontostyle and odontophore 118-132 and 65-74 µm long, respectively, presence of sperm in the female genital tracts, uterus devoid of any Z-differentiation or spines, and abundant males with spicules 45-58 µm long. The polytomous identification codes of the new species are: A4, B4, C5a, D5, E56, F4, G23, H2, I3, J4, K2, L2. Beside morphological and morphometric data, molecular analyses of D2-D3 fragments of 28S rRNA gene placed the new species in close relationship with X. vuittenezi and X. italiae and some species belonging to Xiphinema morphospecies group 6, but clearly separated from X. index. In addition, an Iranian population of Longidorus pisi from the same locality is morphologically and molecularly characterised. [ABSTRACT FROM AUTHOR]
- Published
- 2012
- Full Text
- View/download PDF
20. Morphological and molecular characterisation of Longidorus pauli (Nematoda: Longidoridae), first report from Greece.
- Author
-
Tzortzakakis EA, Clavero-Camacho I, Cantalapiedra-Navarrete C, Ralli P, Palomares-Rius JE, Castillo P, and Archidona-Yuste A
- Abstract
Sampling for needle nematodes was carried out in a grapevine area in Thessaloniki, North Greece and two nematode species of Longidorus ( L. pauli and L. pisi ) were collected. Nematodes were extracted from 500 cm
3 of soil by modified sieving and decanting method, processed to glycerol and mounted on permanent slides, and subsequently identified morphologically and molecularly. Nematode DNA was extracted from single individuals and PCR assays were conducted to amplify D2-D3 expansion segments of 28S rRNA, ITS1 rRNA, and partial mitochondrial coxI regions. Morphology and morphometry data obtained from these populations were consistent with L. pauli and L. pisi identifications. To our knowledge, this is the first report of L. pauli for Greece, and the second world report after the original description from Idleb, Syria, extending the geographical distribution of this species in the Mediterranean Basin., (© 2021 Authors.)- Published
- 2021
- Full Text
- View/download PDF
21. First reports, morphological, and molecular characterization of longidorus caespiticola and Longidorus poessneckensis (Nematoda: Longidoridae) from Ukraine
- Author
-
Antonio Archidona-Yuste, Pablo Castillo, and Solomia Susulovska
- Subjects
0106 biological sciences ,Longidorus poessneckensis ,needle nematodes ,010607 zoology ,detection ,Zoology ,Biology ,01 natural sciences ,taxonomy ,28S ribosomal RNA ,Longidorus ,Longidoridae ,lcsh:QH301-705.5 ,Research Notes ,Taxonomy ,Needle nematodes ,28S rDNA ,Life Sciences ,biology.organism_classification ,Detection ,Nematode ,lcsh:Biology (General) ,GenBank ,Taxonomy (biology) ,D2–D3 segments ,Longidorus caespiticola ,010606 plant biology & botany - Abstract
Seven needle nematode species of the genus Longidorus have been reported in Ukraine. Nematological surveys for needle nematodes were carried out in Ukraine between 2016 and 2017 and two nematode species of Longidorus ( L. caespiticola and L. poessneckensis ) were collected from natural and anthropogenically altered habitats on the territory of Opillia and Zakarpattia in Ukraine. Nematodes were extracted from 500 cm 3 of soil by modified sieving and decanting method. Extracted specimens were processed to glycerol and mounted on permanent slides and subsequently identified morphologically and molecularly. Nematode DNA was extracted from single individuals and PCR assays were conducted as previously described for D2–D3 expansion segments of 28S rRNA. Sequence alignments for D2–D3 from L. caespiticola showed 97%–99% similarity to other sequences of L. caespiticola deposited in GenBank from Belgium, Bulgaria, Czech Republic, Russia, Slovenia, and Scotland. Similarly, D2–D3 sequence align- ments from L. poessneckensis , showed 99% to other sequences of L. poessneckensis deposited in GenBank from Slovakia and Czech Republic. Morphology, morphometry, and molecular data obtained from these samples were consistent with L. caespiticola and L. poessneckensis identification. To our knowledge, these are the first reports of L. caespiticola and L. poessneckensis in Ukraine, extending the geographical distribution of these species.
Catalog
Discovery Service for Jio Institute Digital Library
For full access to our library's resources, please sign in.