1. Microbacterium humicola sp. nov., Microbacterium terrisoli sp. nov., Paenibacillus pedocola sp. nov., Paenibacillus silviterrae sp. nov., Flavobacterium terrisoli sp. nov., and Aquabacterium humicola sp. nov., isolated from soil.
- Author
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Lee H, Chaudhary DK, Lee KE, Cha IT, Chi WJ, and Kim DU
- Subjects
- Republic of Korea, Soil Microbiology, Phylogeny, RNA, Ribosomal, 16S genetics, Fatty Acids, DNA, Bacterial genetics, Paenibacillus classification, Paenibacillus genetics, Paenibacillus isolation & purification, Bacterial Typing Techniques, Sequence Analysis, DNA, Nucleic Acid Hybridization, Flavobacterium genetics, Flavobacterium classification, Flavobacterium isolation & purification, Base Composition, Microbacterium genetics
- Abstract
Four Gram-stain-positive and two Gram-stain-negative bacterial strains, designated as W4
T , FW7T , TW48T , UW52T , PT-3T , and RJY3T , were isolated from soil samples collected from the Republic of Korea. The 16S rRNA gene sequence analysis showed that strains W4T and FW7T belonged to the genus Microbacterium , strains TW48T and UW52T were affiliated to the genus Paenibacillus, strain PT-3T was related to the genus Flavobacterium , and strain RJY3T was associated with the genus Aquabacterium . The closest phylogenetic taxa to W4T , FW7T , TW48T , UW52T , PT-3T , and RJY3T were Microbacterium bovistercoris NEAU-LLET (97.7 %), Microbacterium protaetiae DFW100M-13T (97.9 %), Paenibacillus auburnensis JJ-7T (99.6 %), Paenibacillus allorhizosphaerae JJ-447T (95.7 %), Flavobacterium buctense T7T (97.1 %), and Aquabacterium terrae S2T (99.5 %), respectively. Average nucleotide identity and digital DNA-DNA hybridization values between the novel strains and related reference type strains were <95.0 % and <70.0 %, respectively. The major cellular fatty acid in strains W4T , FW7T TW48T , and UW52T was antiso-C15 : 0 . Similarly, strain PT-3T revealed iso-C15 : 0 , iso-C15 : 1 G, iso-C17 : 0 3-OH, and iso-C15 : 0 3-OH as its principal fatty acids. On the other hand, RJY3T exhibited summed feature 3 (C16 : 1 ω 7 c and/or C16 : 1 ω 6 c ), C16 : 0 , summed feature 8 (C18 : 1 ω 7 c and/or C18 : 1 ω 6 c ), and C12 : 0 as its predominant fatty acids. Overall, the polyphasic taxonomic data indicated that strains W4T , FW7T , TW48T , UW52T , PT-3T , and RJY3T represent novel species within the genera Microbacterium , Paenibacillus , Flavobacterium , and Aquabacterium . Accordingly, we propose the names Microbacterium humicola sp. nov., with the type strain W4T (=KCTC 49888T =NBRC 116001T ), Microbacterium terrisoli sp. nov., with the type strain FW7T (=KCTC 49859T =NBRC 116000T ), Paenibacillus pedocola sp. nov., with the type strain TW48T (=KCTC 43470T =NBRC 116017T ), Paenibacillus silviterrae sp. nov., with the type strain UW52T (=KCTC 43477T =NBRC 116018T ), Flavobacterium terrisoli sp. nov., with the type strain PT-3T (=KCTC 92106T =NBRC 116012T ), and Aquabacterium humicola sp. nov., with the type strain RJY3T (=KCTC 92105T =NBRC 115831T ).- Published
- 2024
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