728 results on '"Ligand"'
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2. Uniform Gold Nanoclusters Supported on Mesoporous Polymer Beads Decorated with Polyaminophosphine Patches for the Catalytic Reduction of 4‑Nitrophenol.
- Author
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Yao, Xiaoqiu, Jin, Ming, Du, Jiang, and Wan, Decheng
- Abstract
In the jigsaw puzzle of quality gold nanoclusters (AuNCs), those protected by weak ligands or coligands are still rarely available. Here, we provide an example in the case of supported AuNCs. Branched polyethylenimine (PEI, diameter of 1.86 nm) is introduced as discrete molecular patches onto the support of mesoporous polymer beads. Each patch is derived into polyaminophosphine with 2-(diphenylphosphino) benzaldehyde (dppb). The molecular patch is of nanoscale and uniform size. The polymer beads after PEI loading bear unimodal pores (3.9 nm), and the specific surface area is of 390 m
2 g–1 . AuNCs are obtained by mildly heating the mixture of the functionalized beads and aqueous chloroauric acids. Uniform AuNCs with a diameter of 1.2 ± 0.2 nm (∼53 Au atoms) are obtained when each PEI patch bears 17 dppb ligands, smaller than that of 3.5 nm in the absence of any dppb, suggesting that dppb enhances the nucleation of AuNCs. The heteroleptic AuNCs show ultrahigh catalytic performance (TOF = 391 h–1 ) for the reduction of 4-nitrophenol, where the dppb ligands hardly suppress the catalytic activity. The catalyst is well recoverable and durable for the reduction of 4-nitrophenol. [ABSTRACT FROM AUTHOR]- Published
- 2023
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3. Synthesis and Stability of Mixed-Diphosphine Ligated Gold Clusters.
- Author
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Philliber, Mallory, Baxter, Eric T., and Johnson, Grant E.
- Abstract
Sub-nanometer gold clusters are promising size- and composition-tunable materials that may be used for advanced technological applications such as catalysis, energy generation, and microelectronics. Synthesis and characterization of phosphine ligated gold clusters containing different ligands provide insight into how steric and electronic effects resulting from changes in chemical functionality influence cluster size, stability, and formation in solution. Herein, we demonstrate that synthesizing gold clusters using two different diphosphines in solution at the same time results in a broad distribution of novel mixed-ligand clusters. In comparison, adding a second diphosphine to a solution of gold clusters presynthesized with another diphosphine does not result in extensive formation of mixed-ligand species. Utilizing high-mass resolution electrospray ionization mass spectrometry, we determined novel cluster compositions and observed size-dependent trends in gold clusters that undergo ligand exchange forming mixed diphosphine species. Adjacent peaks in the mass spectra, separated by characteristic mass-to-charge ratios, provide evidence for multiple 1,3-bis-(diphenylphosphino)-propane (L3) and 1,5-bis-(diphenylphosphino)-pentane (L5) ligands on cationic clusters containing 8, 10, 11, and 22 gold atoms. Energy-resolved collision-induced dissociation experiments provide qualitative insight into how different diphosphine ligands affect the relative stability of specific size gold clusters. Our results indicate that mixed-ligand clusters containing both L3 and L5 are generally more stable than their single ligand counterparts containing either L3 or L5. These molecular-level insights will facilitate the rational and scalable synthesis of gold clusters for targeted applications. [ABSTRACT FROM AUTHOR]
- Published
- 2022
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4. Elucidating the Interplay between Symmetry Distortions in Passivated MAPbI 3 and the Rashba Splitting Effect.
- Author
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Ali BA, Yew S, and Musgrave CB
- Abstract
Hybrid organic-inorganic perovskites play a critical role in modern optoelectronic applications, particularly as single photon sources due to their unusual bright ground state. However, the presence of trap states resulting from surface dangling bonds hinders their widespread commercial application. This work uses density functional theory (DFT) to study the effects of various passivating ligands and their binding sites on Rashba splitting, a phenomenon directly linked to the bright ground state. Our results predict that X2- and X4-type ligands that adsorb at acidic oxygen binding sites and zwitterionic binding sites efficiently eliminate trap states introduced by surface iodine vacancies. Furthermore, our results show that distortions from the nominally symmetric cubic structure of the perovskite predominantly determine the presence and magnitude of the Rashba splitting. Specifically, the loss of more symmetry elements consistently leads to Rashba splitting in both the valence band (VB) and the conduction band (CB) with small Rashba splitting coefficients. Conversely, although inversion symmetry breaking alone fails to guarantee the presence of pure Rashba splitting in both the VB and the CB, it significantly increases the degree of splitting. The adsorption of ligands not only mitigates trap states but also plays a critical role in altering the local symmetry, thus influencing Rashba splitting. DFT predicts a distinct Rashba-Dresselhaus splitting in the CB with X2 ligands, causing the largest splitting. The presence of local electric fields causes consistent Rashba splitting of the VB across all studied systems except for the X4 zwitterionic passivated systems (sulfobetaine and lecithin). Electric fields are predicted to cause significant splitting of the CB, particularly for MAPbI
3 and SH passivated MAPbI3 surfaces that possess freely rotating ligand binding sites. This study reveals that the wavelength, tunability of Rashba splitting through an applied electric field, and nature of Rashba-Dresselhaus splitting are influenced by the characteristics of the ligand binding site. On the other hand, pure Rashba splitting is predicted to exhibit a greater susceptibility to symmetry distortion than to specific ligand binding sites. These findings elucidate how surface passivating ligands and symmetry distortions influence Rashba splitting, shaping the optoelectronic properties of perovskite nanocrystals.- Published
- 2024
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5. Template-Assisted Growth of High-Quality α-Phase FAPbI 3 Crystals in Perovskite Solar Cells Using Thiol-Functionalized MoS 2 Nanosheets.
- Author
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Yin Y, Zhou Y, Fu S, Lin YC, Zuo X, Raut A, Zhang Y, Tsai EHR, Li M, Lu F, Zhou C, Li TD, Kisslinger K, Cotlet M, Nam CY, and Rafailovich MH
- Abstract
Formamidinium lead iodide (FAPI) has gained attention for hybrid perovskite solar cell (PSC) applications due to its enhanced stability and narrow bandgap. However, a significant challenge remains in inducing and stabilizing the elusive perovskite "black phase"─photoactive cubic α-FAPI─as the relatively bulky FA
+ cations tend to favor the thermodynamically stable nonphotoactive "yellow phase". In this study, we present a templated growth strategy employing thiol-functionalized MoS2 nanosheets as templates. By introduction of 3-mercaptopropionic acid (MPA)-functionalized MoS2 as a growth template, precise control over crystal formation was achieved, favoring the growth of high-quality α-FAPI films. These advanced templated films exhibited substantial improvements in charge transport properties, efficient light absorption, and enhanced charge extraction. As a result, the PSCs achieved a significantly enhanced power conversion efficiency (PCE) compared to the nontemplated control device, increasing from 20.6 to 22.5%. The MoS2 -incorporated device also demonstrated excellent shelf stability, maintaining 91% of the initial PCE even after 1600 h of storage without device encapsulation.- Published
- 2024
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6. Ligify: Automated Genome Mining for Ligand-Inducible Transcription Factors.
- Author
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d'Oelsnitz S, Love JD, Ellington AD, and Ross D
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- Ligands, Plasmids genetics, Software, Escherichia coli genetics, Escherichia coli metabolism, Green Fluorescent Proteins genetics, Green Fluorescent Proteins metabolism, Transcription Factors genetics, Transcription Factors metabolism, Biosensing Techniques methods
- Abstract
Prokaryotic transcription factors can be repurposed into biosensors for the ligand-inducible control of gene expression, but the landscape of chemical ligands for which biosensors exist is extremely limited. To expand this landscape, we developed Ligify, a web application that leverages information in enzyme reaction databases to predict transcription factors that may be responsive to user-defined chemicals. Candidate transcription factors are then incorporated into automatically generated plasmid sequences that are designed to express GFP in response to the target chemical. Our benchmarking analyses demonstrated that Ligify correctly predicted 31/100 previously validated biosensors and highlighted strategies for further improvement. We then used Ligify to build a panel of genetic circuits that could induce a 47-fold, 5-fold, 9-fold, and 27-fold change in fluorescence in response to D-ribose, L-sorbose, isoeugenol, and 4-vinylphenol, respectively. Ligify should enhance the ability of researchers to quickly develop biosensors for an expanded range of chemicals and is publicly available at https://ligify.groov.bio.
- Published
- 2024
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7. Aluminum Carboxylate Modification Enabled Efficient and Stable Perovskite-Polystyrene Thin Films for Light-Emitting Applications.
- Author
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Wang Y, Wang R, Ge Y, Geng C, and Xu S
- Abstract
Lead halide perovskite nanocrystals (PNCs) have demonstrated great potential in emerging display technologies. However, the practical application of PNCs is hindered by the inherent instability of their ionic surface. Here, we proposed a surface modification approach to enhance the stability of CsPbBr
3 PNCs by postsynthetic treatment with aluminum phenylbutyrate (Al(PA)3 ). Our study reveals that Al(PA)3 displaces ammonium ligands and binds tightly on surface halide, providing excellent air and moisture resistance while preserving a high quantum efficiency of 81.6%. The modified PNCs maintain a constant photoluminescence intensity under continuous UV light illumination for 500 h. Additionally, the Al(PA)3 ligand is compatible with styrene, enabling homogeneous dispersion of PNCs in polystyrene matrices to form bright and uniform PNC-PS thin films. We demonstrated the application of the composite films for display backlighting, which exhibits a wide color gamut of 125% NTSC. The result highlights the potential of AlPA-modified PNCs in light-emitting and other optoelectronic devices.- Published
- 2024
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8. Active Learning of Ligands That Enhance Perovskite Nanocrystal Luminescence.
- Author
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Kim MA, Ai Q, Norquist AJ, Schrier J, and Chan EM
- Abstract
Ligands play a critical role in the optical properties and chemical stability of colloidal nanocrystals (NCs), but identifying ligands that can enhance NC properties is daunting, given the high dimensionality of chemical space. Here, we use machine learning (ML) and robotic screening to accelerate the discovery of ligands that enhance the photoluminescence quantum yield (PLQY) of CsPbBr
3 perovskite NCs. We developed a ML model designed to predict the relative PL enhancement of perovskite NCs when coordinated with a ligand selected from a pool of 29,904 candidate molecules. Ligand candidates were selected using an active learning (AL) approach that accounted for uncertainty quantified by twin regressors. After eight experimental iterations of batch AL (corresponding to 21 initial and 72 model-recommended ligands), the uncertainty of the model decreased, demonstrating an increased confidence in the model predictions. Feature importance and counterfactual analyses of model predictions illustrate the potential use of ligand field strength in designing PL-enhancing ligands. Our versatile AL framework can be readily adapted to screen the effect of ligands on a wide range of colloidal nanomaterials.- Published
- 2024
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9. Direct Synthesis of Sulfide-Capped Nanoparticles for Carbon-Free Solution-Processed Photovoltaics.
- Author
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Ellis, Ryan G., Deshmukh, Swapnil D., Turnley, Jonathan W., Sutandar, Dwi S., Fields, Jacob P., and Agrawal, Rakesh
- Abstract
Colloidal nanoparticles have demonstrated significant promise in the fabrication of solution-processed Cu-(In,Ga)-(S,Se)
2 photovoltaics. However, carbonaceous impurities from long-chain native ligands retained in the films during and after heat treatments have necessitated the exploration of postsynthetic ligand-exchange procedures, which increases process complexity and solvent usage and could potentially reduce the cost advantages that solution processing aims to deliver over conventional vacuum processing. In this report, a new method to directly synthesize anion impurity-free CuInS2 (CIS) nanoparticles with both inorganic and thermally degradable thioacetamide (TAA) ligands is developed to bypass the need for ligand exchange completely. Metal thiolate complexes were isolated from solutions of Cu2 S or Cu and In precursors in amine–thiol mixtures. The isolated metal thiolate complexes were solubilized in the readily available and low-toxicity solvent sulfolane and thermally decomposed to CIS nanoparticles in the presence of TAA. H2 S formed during thiolate decomposition was used in conjunction with TAA as ligands for nanoparticles. High-mass-concentration ink in the low-toxicity polar solvent dimethyl sulfoxide was used to easily deposit thin films using scalable blade coating. A CuInSe2 photovoltaic device with a total area power conversion efficiency of 7.1% was prepared from a carbon-free CIS nanoparticle film. Further, synthetic methods were successfully adapted to the more complex quaternary material Cu2 ZnSnS4 , where phase-pure material synthesis was observed. The developed methods represent a paradigm shift in the synthesis of metal sulfide nanomaterials and the subsequent solution processing of photovoltaics without the need for ligand exchange. [ABSTRACT FROM AUTHOR]- Published
- 2021
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10. Crack-Free Conjugated PbS Quantum Dot–Hole Transport Layers for Solar Cells.
- Author
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Sharma, Ashish, Dambhare, Neha V., Bera, Jayanta, Sahu, Satyajit, and Rath, Arup K.
- Abstract
Colloidal quantum dots (QDs) benefit from solution-phase processing and band-gap tuning for their application in solar cell development. Today's QD solar cells rely on solid-state ligand exchange (SLE) to replace bulky oleic acid (OA) ligands with small 1,2-ethanedithiol (EDT) ligands to develop a conducting hole transport layer (HTL). High volume contraction in EDT conjugated QD films, however, leads to crack and porosity in the HTL, which is a major cause of concern for the device reproducibility and large-area solar cell development. We show that partial removal of the OA ligands in the solution phase reduces the volume contraction in solid films, thereby allowing the growth of crack-free QD films in the SLE process. The cleaning of QDs by repeated precipitation and redispersion using a protic methanol (MeOH) solvent helps with partial removal of the OA ligands, but it is detrimental to the electronic properties of QDs. We develop a one-step solution-phase partial ligand-exchange process using ammonium salts, which enable partial replacement of the OA ligands and passivation of the QD surface. Introduction of the facile partial ligand-exchange process eliminates the need for tedious and wasteful multiple cleaning steps with MeOH, while improving the photophysical properties of QDs. The advancement in QD processing helps to build crack-free, smooth, and conjugated QD films for their deployment as HTLs in solar cell development. Partial ligand exchange with NH
4 SCN leads to a 1.5 times increase in p doping and mobility over multiple MeOH-cleaned PbS QD films. HTLs developed using NH4 SCN QDs show an improved photovoltaic performance to attain a 10.5% power conversion efficiency. Improvement in the depletion width and hole collection efficiency leads to a superior photovoltaic performance, as confirmed from experimental studies and one-dimensional solar cell capacitance simulation. [ABSTRACT FROM AUTHOR]- Published
- 2021
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11. Comprehensive Prediction of Molecular Recognition in a Combinatorial Chemical Space Using Machine Learning.
- Author
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Taguchi, Alexander T., Boyd, James, Diehnelt, Chris W., Legutki, Joseph B., Zhao, Zhan-Gong, and Woodbury, Neal W.
- Published
- 2020
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12. Utilizing Data Mining for the Synthesis of Functionalized Tungsten Oxide with Enhanced Oxygen Vacancies for Highly Sensitive Detection of Triethylamine.
- Author
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Shao S, Yan L, Zhang L, Zhang J, Li Z, Kim HW, and Kim SS
- Abstract
The optimal combination of metal ions and ligands for sensing materials was estimated by using a data-driven model developed in this research. This model utilized advanced computational algorithms and a data set of 100,000 literature pieces. The semiconductor metal oxide (SMO) that is most suitable for detecting triethylamine (TEA) with the highest probability was identified by using the Word2vec model, which employed the maximum likelihood method. The loss function of the probability distribution was minimized in this process. Based on the analysis, a novel hierarchical nanostructured tungsten-based coordination with 2,5-dihydroxyterephthalic acid (W-DHTA) was synthesized. This synthesis involved a postsynthetic hydrothermal treatment (psHT) and the self-assembly of tungsten oxide nanorods. The tungsten oxide nanorods had a significant number of oxygen vacancies. Various techniques were used to characterize the synthesized material, and its sensing performance toward volatile organic compound (VOC) gases was evaluated. The results showed that the functionalized tungsten oxide exhibited an exceptionally high sensitivity and selectivity toward TEA gas. Even in a highly disturbed environment, the detection limit for TEA gas was as low as 40 parts per billion (ppb). Furthermore, our findings suggest that the control of oxygen vacancies in sensing materials plays a crucial role in enhancing the sensitivity and selectivity of gas sensors. This approach was supported by the utilization of density functional theory (DFT) computation and machine learning algorithms to assess and analyze the performance of sensor devices, providing a highly efficient and universally applicable research methodology for the development and design of next-generation functional materials.
- Published
- 2024
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13. Ligand-Mediated Mechanical Enhancement in Protein Complexes at Nano- and Macro-Scale.
- Author
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Kim S, Cathey MVJ, Bounds BC, Scholl Z, Marszalek PE, and Kim M
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- Ligands, Streptavidin chemistry, Microscopy, Atomic Force, Biotin chemistry, Proteins
- Abstract
Protein self-assembly plays a vital role in a myriad of biological functions and in the construction of biomaterials. Although the physical association underlying these assemblies offers high specificity, the advantage often compromises the overall durability of protein complexes. To address this challenge, we propose a novel strategy that reinforces the molecular self-assembly of protein complexes mediated by their ligand. Known for their robust noncovalent interactions with biotin, streptavidin (SAv) tetramers are examined to understand how the ligand influences the mechanical strength of protein complexes at the nanoscale and macroscale, employing atomic force microscopy-based single-molecule force spectroscopy, rheology, and bioerosion analysis. Our study reveals that biotin binding enhances the mechanical strength of individual SAv tetramers at the nanoscale. This enhancement translates into improved shear elasticity and reduced bioerosion rates when SAv tetramers are utilized as cross-linking junctions within hydrogel. This approach, which enhances the mechanical strength of protein-based materials without compromising specificity, is expected to open new avenues for advanced biotechnological applications, including self-assembled, robust biomimetic scaffolds and soft robotics.
- Published
- 2024
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14. Exploring the Fatty Acid Binding Pocket in the SARS-CoV-2 Spike Protein - Confirmed and Potential Ligands.
- Author
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Queirós-Reis L, Mesquita JR, Brancale A, and Bassetto M
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- Humans, SARS-CoV-2 metabolism, Spike Glycoprotein, Coronavirus metabolism, Ligands, Antiviral Agents pharmacology, Fatty Acids, Glycoproteins, Protein Binding, COVID-19
- Abstract
Severe Acute Respiratory syndrome 2 (SARS-CoV-2) is a respiratory virus responsible for coronavirus disease 19 (COVID-19) and the still ongoing and unprecedented global pandemic. The key viral protein for cell infection is the spike glycoprotein, a surface-exposed fusion protein that both recognizes and mediates entry into host cells. Within the spike glycoprotein, a fatty acid binding pocket (FABP) was confirmed, with the crystallization of linoleic acid (LA) occupying a well-defined site. Importantly, when the pocket is occupied by a fatty acid, an inactive conformation is stabilized, and cell recognition is hindered. In this review, we discuss ligands reported so far for this site, correlating their activity predicted through in silico studies with antispike experimental activity, assessed by either binding assays or cell-infection assays. LA was the first confirmed ligand, cocrystallized in a cryo-EM structure of the spike protein, resulting in increased stability of the inactive conformation of the spike protein. The next identified ligand, lifitegrast, was also experimentally confirmed as a ligand with antiviral activity, suggesting the potential for diverse chemical scaffolds to bind this site. Finally, SPC-14 was also confirmed as a ligand, although no inhibition assays were performed. In this review, we identified 20 studies describing small-molecule compounds predicted to bind the pocket in in silico studies and with confirmed binding or in vitro activity, either inhibitory activity against the spike-ACE2 interaction or antiviral activity in cell-based assays. When considering all ligands confirmed with in vitro assays, a good overall occupation of the pocket should be complemented with the ability to make direct interactions, both hydrophilic and hydrophobic, with key amino acid residues defining the pocket surface. Among the active compounds, long flexible carbon chains are recurrent, with retinoids capable of binding the FABP, although bulkier systems are also capable of affecting viral fitness. Compounds able to bind this site with high affinity have the potential to stabilize the inactive conformation of the SARS-CoV-2 spike protein and therefore reduce the virus's ability to infect new cells. Since this pocket is conserved in highly pathogenic human coronaviruses, including MERS-CoV and SARS-CoV, this effect could be exploited for the development of new antiviral agents, with broad-spectrum anticoronavirus activity.
- Published
- 2023
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15. Assessing the Steric Impact of Surface Ligands on the Proteolytic Turnover of Quantum Dot-Peptide Conjugates.
- Author
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Krause KD, Rees K, and Algar WR
- Abstract
Proteases are important biomarkers and targets for the diagnosis and treatment of disease. The advantageous properties of semiconductor quantum dots (QDs) have made these nanoparticles useful as probes for protease activity; however, the effects of QD surface chemistry on protease activity are not yet fully understood. Here, we present a systematic study of the impact of sterics on the proteolysis of QD-peptide conjugates. The study utilized eight proteases (chymotrypsin, trypsin, endoproteinase Lys C, papain, endoproteinase Arg C, thrombin, factor Xa, and plasmin) and 41 distinct surface chemistries. The latter included three molecular weights of each of three macromolecular ligands derived from dextran and polyethylene glycol, as well as anionic and zwitterionic small-molecule ligands, and an array of mixed coatings of macromolecular and small-molecule ligands. These surface chemistries spanned a diversity of thicknesses, densities, and packing organization, as characterized by gel electrophoresis, capillary electrophoresis, dynamic light scattering, and infrared spectroscopy. The macromolecular ligands decreased the adsorption of proteases on the QDs and decelerated proteolysis of the QD-peptide conjugates via steric hindrance. The properties of the QD surface chemistry, rather than the protease properties, were the main factor in determining the magnitude of deceleration. The broad scope of this study provides insights into the many ways in which QD surface chemistry affects protease activity, and will inform the development of optimized nanoparticle-peptide conjugates for sensing of protease activity and resistance to unwanted proteolysis.
- Published
- 2023
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16. Highly Concentrated, Zwitterionic Ligand-Capped Mn2+:CsPb(BrxCl1–x)3 Nanocrystals as Bright Scintillators for Fast Neutron Imaging
- Author
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Federico Montanarella, Kostiantyn Sakhatskyi, Kyle M. McCall, Ihor Cherniukh, Maksym V. Kovalenko, David Mannes, Pavel Trtik, Caterina Bernasconi, Bernhard Walfort, Maryna I. Bodnarchuk, Markus Strobl, and Sergii Yakunin
- Subjects
Materials science ,Letter ,Renewable Energy, Sustainability and the Environment ,Ligand ,Neutron imaging ,Energy Engineering and Power Technology ,02 engineering and technology ,Scintillator ,010402 general chemistry ,021001 nanoscience & nanotechnology ,01 natural sciences ,0104 chemical sciences ,Crystallography ,Fuel Technology ,Nanocrystal ,Chemistry (miscellaneous) ,Materials Chemistry ,0210 nano-technology - Abstract
Fast neutron imaging is a nondestructive technique for large-scale objects such as nuclear fuel rods. However, present detectors are based on conventional phosphors (typically microcrystalline ZnS:Cu) that have intrinsic drawbacks, including light scattering, γ-ray sensitivity, and afterglow. Fast neutron imaging with colloidal nanocrystals (NCs) was demonstrated to eliminate light scattering. While lead halide perovskite (LHP) FAPbBr3 NCs emitting brightly showed poor spatial resolution due to reabsorption, the Mn2+-doped CsPb(BrCl)3 NCs with oleyl ligands had higher resolution because of large apparent Stokes shift but insufficient concentration for high light yield. In this work, we demonstrate a NC scintillator that features simultaneously high quantum yields, high concentrations, and a large apparent Stokes shift. In particular, we use long-chain zwitterionic ligand capping in the synthesis of Mn2+-doped CsPb(BrCl)3 NCs that allows for attaining very high concentrations (>100 mg/mL) of colloids. The emissive behavior of these ASC18-capped NCs was carefully controlled by compositional tuning that permitted us to select for high quantum yields (>50%) coinciding with Mn-dominated emission for minimal self-absorption. These tailored Mn2+:CsPb(BrCl)3 NCs demonstrated over 8 times brighter light yield than their oleyl-capped variants under fast neutron irradiation, which is competitive with that of near-unity FAPbBr3 NCs, while essentially eliminating self-absorption. Because of their rare combination of concentrations above 100 mg/mL and high quantum yields, along with minimal self-absorption for good spatial resolution, Mn2+:CsPb(BrCl)3 NCs have the potential to displace ZnS:Cu as the leading scintillator for fast neutron imaging.
- Published
- 2021
17. Allosteric Effect of Nanobody Binding on Ligand-Specific Active States of the β2 Adrenergic Receptor
- Author
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Oliver Fleetwood, Yue Chen, Lucie Delemotte, and Sergio Pérez-Conesa
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Agonist ,medicine.drug_class ,Protein Conformation ,General Chemical Engineering ,Allosteric regulation ,Biophysics ,Library and Information Sciences ,Molecular Dynamics Simulation ,Ligands ,Article ,Allosteric Regulation ,Extracellular ,medicine ,Binding site ,Receptor ,G protein-coupled receptor ,Binding Sites ,Chemistry ,Drug discovery ,Ligand ,General Chemistry ,Ligand (biochemistry) ,Transmembrane protein ,Computer Science Applications ,Transmembrane domain ,Receptors, Adrenergic, beta-2 ,Intracellular ,Signal Transduction - Abstract
Nanobody binding stabilizes G-protein-coupled receptors (GPCR) in a fully active state and modulates their affinity for bound ligands. However, the atomic-level basis for this allosteric regulation remains elusive. Here, we investigate the conformational changes induced by the binding of a nanobody (Nb80) on the active-like β2 adrenergic receptor (β2AR) via enhanced sampling molecular dynamics simulations. Dimensionality reduction analysis shows that Nb80 stabilizes structural features of the β2AR with an ∼14 A outward movement of transmembrane helix 6 and a close proximity of transmembrane (TM) helices 5 and 7, and favors the fully active-like conformation of the receptor, independent of ligand binding, in contrast to the conditions under which no intracellular binding partner is bound, in which case the receptor is only stabilized in an intermediate-active state. This activation is supported by the residues located at hotspots located on TMs 5, 6, and 7, as shown by supervised machine learning methods. Besides, ligand-specific subtle differences in the conformations assumed by intracellular loop 2 and extracellular loop 2 are captured from the trajectories of various ligand-bound receptors in the presence of Nb80. Dynamic network analysis further reveals that Nb80 binding triggers tighter and stronger local communication networks between the Nb80 and the ligand-binding sites, primarily involving residues around ICL2 and the intracellular end of TM3, TM5, TM6, as well as ECL2, ECL3, and the extracellular ends of TM6 and TM7. In particular, we identify unique allosteric signal transmission mechanisms between the Nb80-binding site and the extracellular domains in conformations modulated by a full agonist, BI167107, and a G-protein-biased partial agonist, salmeterol, involving mainly TM1 and TM2, and TM5, respectively. Altogether, our results provide insights into the effect of intracellular binding partners on the GPCR activation mechanism, which should be taken into account in structure-based drug discovery.
- Published
- 2021
18. Asymmetric Full Saturation of Vinylarenes with Cooperative Homogeneous and Heterogeneous Rhodium Catalysis
- Author
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Luca Massaro, Jianping Yang, Haibo Wu, Bram B. C. Peters, Jia Zheng, and Pher G. Andersson
- Subjects
Olefin fiber ,Ligand ,Asymmetric hydrogenation ,Chiral ligand ,chemistry.chemical_element ,General Chemistry ,Biochemistry ,Combinatorial chemistry ,Catalysis ,Article ,Rhodium ,chemistry.chemical_compound ,Colloid and Surface Chemistry ,chemistry ,Selectivity ,Phosphine - Abstract
Homogeneous and heterogeneous catalyzed reactions can seldom operate synergistically under the same conditions. Here we communicate the use of a single rhodium precursor that acts in both the homogeneous and heterogeneous phases for the asymmetric full saturation of vinylarenes that, to date, constitute an unmet bottleneck in the field. A simple asymmetric hydrogenation of a styrenic olefin, enabled by a ligand accelerated effect, accounted for the facial selectivity in the consecutive arene hydrogenation. Tuning the ratio between the phosphine ligand and the rhodium precursor controlled the formation of homogeneous and heterogeneous catalytic species that operate without interference from each other. The system is flexible in terms of both the chiral ligand and the nature of the external olefin. We anticipate that our findings will promote the development of asymmetric arene hydrogenations.
- Published
- 2021
19. Magnetic, Photo- and Electroluminescent: Multifunctional Ionic Tb Complexes
- Author
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Guillaume Bousrez, Volodymyr Smetana, Anja-Verena Mudring, Olivier Renier, and Veronica Paterlini
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Photoluminescence ,Ligand ,Energy transfer ,chemistry.chemical_element ,Ionic bonding ,Terbium ,Electroluminescence ,Article ,Inorganic Chemistry ,Crystallography ,chemistry ,Excited state ,Physical and Theoretical Chemistry ,Excitation - Abstract
In the search for new multifunctional materials, particularly for application in solid-state lighting, a set of terbium salicylato (Sal) complexes of general composition [Cat][Tb(Sal)4] with the commonly ionic liquid-forming (IL) cations [Cat] = (2-hydroxyethyl)trimethylammonium (choline) (Chol+), diallyldimethylammonium (DADMA+), 1-ethyl-3-methylimidazolium (C2C1Im+), 1-butyl-3-methylimidazolium (C4C1Im+), 1-ethyl-3-vinylimidazolium (C2Vim+), and tetrabutylphosphonium (P4444+) were synthesized. All Tb compounds exhibit strong green photoluminescence of high color purity by energy transfer from the ligand in comparison with what the analogous La compounds show, and quantum yields can reach up to 63% upon ligand excitation. When excited with an HF generator, the compounds show strong green electroluminescence with the same features of mission. The findings promise a high potential of application as emitter materials in solid-state lighting. As an additional feature, the Tb compounds show a strong response to applied external fields, rendering them multifunctional materials., Terbium-containing organic-inorganic hybrid materials such as ionic complexes allow for unique property combinations that can open up new applications
- Published
- 2021
20. Closo- or Nido-Carborane Diphosphane as Responsible for Strong Thermochromism or Time Activated Delayed Fluorescence (TADF) in [Cu(N^N)(P^P)]0/+
- Author
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Adrián Alconchel, M. Concepción Gimeno, Olga Crespo, Pilar García-Orduña, Ministerio de Ciencia, Innovación y Universidades (España), Agencia Estatal de Investigación (España), and Diputación General de Aragón
- Subjects
Thermochromism ,Chemistry ,Ligand ,Cationic polymerization ,Quantum yield ,Article ,Inorganic Chemistry ,Crystallography ,chemistry.chemical_compound ,Carborane ,Diphosphane ,Physical and Theoretical Chemistry ,Luminescence ,Diimine - Abstract
Ortho-closo or ortho-nido-carborane-diphosphanes have been selected to prepare the heteroleptic cationic or neutral [Cu(N^N){(PPh2)2C2B10H10}]PF6 (1) and [Cu(N^N){(PPh2)2C2B9H10}] (2) [N^N = 2-(4-thiazolyl)benzimidazole], respectively. Complexes 1 and 2 display very different emissive behavior. Neutral complex 2 exhibits TADF (time activated delayed fluorescence) which has been studied both as powder and PMMA composite with similar ΔE(S1 – T1), τ(T1), and τ(S1) in both phases. Cationic complex 1 displays a much lower quantum yield than 2 and does not show TADF, but it exhibits a significant thermochromic luminescence, and its emission is very dependent on the medium. Theoretical studies show that metal–ligand (M–diphosphane) to ligand (L′, diimine) transitions, MLL′CT, are responsible of the transitions which originate the emissive properties, but with very different contribution of the copper center, carborane cluster, and diphosphane phenyl rings for 1 and 2., The authors also thank the Agencia Estatal de Investigación PID2019-104379RB-C21/AEI/10.13039/50110001103 and DGA-FSE (E07_20R) for financial support and to the Centro de Supercomputación de Galicia (CESGA) for providing access to the Finish Terrae supercomputer. A.A. appreciates the predoctoral contract award BES-2017-082997.
- Published
- 2021
21. Role of Ag+ Ions in Determining Ce3+ Optical Properties in Fluorophosphate and Sulfophosphate Glasses
- Author
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Yicong Ding, Ru Zhou, Lothar Wondraczek, and Courtney Calahoo
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Materials science ,Photoluminescence ,Dopant ,Ligand ,General Chemical Engineering ,Nanoparticle ,02 engineering and technology ,General Chemistry ,021001 nanoscience & nanotechnology ,medicine.disease_cause ,7. Clean energy ,01 natural sciences ,Redox ,Ion ,Crystallography ,Chemistry ,Covalent bond ,0103 physical sciences ,medicine ,010306 general physics ,0210 nano-technology ,QD1-999 ,Ultraviolet - Abstract
Understanding the interactions among dopant species and the role of the host lattice is of fundamental importance for the chemical formulation of optically active glasses. Here, we consider the archetypal dopant pair of Ag-Ce in complex fluorophosphate (PF) and sulfophosphate (PS) matrices, in which variable bonding environments and ligand selectivity exert distinct effects on dopant properties. The addition of Ag+ to PF glasses blue-shifts the ultraviolet (UV) cutoff wavelength of Ce3+ and enhances its photoluminescence (PL) intensity. In PS matrices, the exact opposite effect is observed: red-shifting the UV cutoff and lowering the PL intensity. No Ag-Ag pairs or cluster species were found in either matrix material; however, in PS, such clustering could be triggered by secondary broad-band UV-visible irradiation. The optical properties of Ag-Ce-codoped glasses are a result of the ionocovalent character of the Ag+-O-Ce3+ bond, the cross-relaxation process between Ag+ and Ce3+, and the redox ratio of Ce3+/Ce4+. In the PF glasses, the enhancement of the Ce3+ PL intensity is due to energy transfer from Ag+ to Ce3+ and a redox shift from Ce4+ to Ce3+. The more covalent Ag+-O-Ce3+ interactions in the PS series decrease the Ce3+/Ce4+ ratio. Moreover, photoinduced Ag clustering is facilitated in the more covalent environment, which indicates that glasses commonly used for Ag nanoparticle formation, such as silicate glasses, also possess more covalent Ag+-O bonding.
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- 2021
22. Further Investigation of Synaptic Vesicle Protein 2A (SV2A) Ligands Designed for Positron Emission Tomography and Single-Photon Emission Computed Tomography Imaging: Synthesis and Structure–Activity Relationship of Substituted Pyridinylmethyl-4-(3,5-difluorophenyl)pyrrolidin-2-ones
- Author
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Sjoerd J. Finnema, Chao Zheng, Marcel Lindemann, Songye Li, Kyle C. Wilcox, Zhengxin Cai, Yiyun Huang, Jie Tong, and Richard Pracitto
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medicine.diagnostic_test ,Ligand ,Stereochemistry ,General Chemical Engineering ,General Chemistry ,Article ,chemistry.chemical_compound ,Chemistry ,chemistry ,Positron emission tomography ,Spect imaging ,medicine ,Moiety ,Structure–activity relationship ,Pharmacophore ,Lead compound ,QD1-999 ,SV2A - Abstract
A series of synaptic vesicle protein 2A (SV2A) ligands were synthesized to explore the structure-activity relationship and to help further investigate a hydrogen bonding pharmacophore hypothesis. Racemic SynVesT-1 was used as a lead compound to explore the replacement of the 3-methyl group on the pyridinyl moiety with halogens and hydrocarbons. Pyridinyl isomers of racemic SynVesT-1 were also investigated. Highly potent analogs were discovered including a 3-iodo pyridinyl ligand amenable to investigation as a PET or SPECT imaging agent.
- Published
- 2021
23. Fluorinated Sterically Bulky Mononuclear and Binuclear 2‑Iminopyridylnickel Halides for Ethylene Polymerization: Effects of Ligand Frameworks and Remote Substituents
- Author
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Zhibin Ye, Tongling Liang, Wenhua Lin, Tian Liu, Wen-Hua Sun, and Qiuyue Zhang
- Subjects
Steric effects ,Chemistry ,Ligand ,General Chemical Engineering ,Methylaluminoxane ,chemistry.chemical_element ,General Chemistry ,Branching (polymer chemistry) ,Medicinal chemistry ,Article ,Catalysis ,Nickel ,chemistry.chemical_compound ,Pyridine ,Bimetallic strip ,QD1-999 - Abstract
In the present work, four new mono(imino)pyridine ligands, 2-((2,4-bis(bis(4-R-phenyl)methyl)-6-fluorophenylimino)methyl)pyridine (R = H, L1; R = OCH3, L2; R = F, L3) and 2-((2-(bis(4-fluorophenyl)methyl)-4-((3-(bis(4-fluorophenyl)methyl)-4-amine-5-fluoro-phenyl)(phenyl)methyl)-6-fluorophenylimino)methyl)pyridine (L4), have been designed in good yields. Additionally, three novel benzhydryl-bridged bis(imino)pyridine ligands, 2-(2-(bis(4-R-phenyl)methyl)-6-fluoro-phenylimino)pyridine (R = H, L5; R = OCH3, L6; R = F, L7), were also prepared for comparison. All these organic compounds have been characterized by FT-IR analysis, 1H/13C NMR spectroscopy, and elemental analysis. The treatment of L1–L7 with nickel halides afforded the corresponding monometallic (Ni1–Ni4) and bimetallic (Ni5–Ni7) nickel complexes in moderate to good overall yields. Upon activation with methylaluminoxane (MAO), Ni4Cl showed the highest activity up to 8.3 × 106 g of polyethylene (PE) (mol of Ni)−1 h–1 among Ni1–Ni7 for ethylene polymerization. In all cases, unsaturated PEs with low molecular weights (0.7–13.3 kg mol–1) were produced effectively. The introduction of remote para-substituents into the benzhydryl groups showed a beneficial effect on catalytic activity with the overall activities following the order of Ni–F > Ni–OCH3 > Ni–H. In addition, these para-substituents were also found to affect not only the catalytic performance of catalysts but also the branching content of the PE product. Generally, the resultant PE waxes were moderately branched and contained both terminal vinyls (−CH=CH2) and internal vinylenes (−CH=CH−) while with different ratios of vinyls to vinylenes. Notably, the polymers produced using para-methoxy-substituted Ni2/MAO and Ni6/MAO possessed the least branching content and uniquely high vinyl contributions.
- Published
- 2021
24. Comparison of the Spectroscopically Measured Catalyst Transformation and Electrochemical Properties of Grubbs’ First- and Second-Generation Catalysts
- Author
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Elizabeth Erasmus, Charlene Marais, and Marthinus Rudi Swart
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Chemistry ,Ligand ,General Chemical Engineering ,Dimer ,General Chemistry ,Electrochemistry ,Decomposition ,Dissociation (chemistry) ,Article ,Catalysis ,chemistry.chemical_compound ,Reaction rate constant ,Physical chemistry ,Spectroscopy ,QD1-999 - Abstract
According to UV-vis spectroscopy (0.10 mM, CH2Cl2 at 25 °C), the catalyst transformation (which could possibly include ligand dissociation with active catalyst formation, dimer formation, and decomposition) rate constants (kobs) of Grubbs' first (1) and second (2) generation catalysts are 7.48 × 10-5 and 1.52 × 10-4 s-1, respectively. From 31P NMR (0.1 M, CD2Cl2, at 25 °C), the catalyst transformation was 5.1% for 1 and 16.5% for 2 after 72 h. However, due to the larger concentrations of the NMR samples compared to the UV-vis samples, the extent of transformation did not correspond. The oxidation potential of the RuII/RuIII couple of 2 (E°' = 27.5 mV at v = 200 mV s-1) was considerably lower than that of 1 (E°' = 167 mV at v = 200 mV s-1). In the case of 1, a second reduction peak appeared at slow scan rates. This may probably be ascribed to an electrochemically active compound that was formed from the intermediate cation 1•+ and the subsequent reduction of the latter. The oxidation/reduction of 1 proceeds according to an ErCi electrochemical mechanism (Er = electrochemically reversible step, Ci = chemically irreversible step), whereas 2 proceeds according to an ErCr electrochemical mechanism (Er = electrochemically reversible step, Ci = chemically reversible step).
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- 2021
25. Photophysical Properties of Cyclometalated Platinum(II) Diphosphine Compounds in the Solid State and in PMMA Films
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Ian C. McClellan, Joseph M. Tanski, Daphne D. Bartkus, Craig M. Anderson, Belle Coffey, Lily Clough, Matthew W. Greenberg, and Christopher N. LaFratta
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Materials science ,Ligand ,General Chemical Engineering ,Quantum yield ,chemistry.chemical_element ,Benzothiophene ,General Chemistry ,Mass spectrometry ,Article ,chemistry.chemical_compound ,Chemistry ,chemistry ,Physical chemistry ,Chelation ,Spectroscopy ,Platinum ,Single crystal ,QD1-999 - Abstract
Platinum(II) compounds were synthesized with both chelate cyclometalated ligands and chelate diphosphine ligands. The cyclometalated ligands include phenylpyridine and a benzothiophene-containing ligand. The three new benzothiophene compounds were characterized by nuclear magnetic resonance (NMR) spectroscopy, high-resolution mass spectrometry (HR-MS), and photophysical measurements. In the case of one compound, L1-DPPM, the structure was determined by single crystal X-ray diffraction. The structural coherence of the noncrystalline emissive solid state was measured by X-ray total scattering real space pair distribution function analysis. Quantum yield values of all of the platinum compounds measured in the solid state and in PMMA films were much greater than in solution.
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- 2021
26. Can 2‑Pyridyl-1,2,3-triazole 'Click' Ligands be Used to Develop Cu(I)/Cu(II) Molecular Switches?
- Author
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Roan A. S. Vasdev, Daniel A. W. Ross, James A Findlay, and James D. Crowley
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Molecular switch ,1,2,3-Triazole ,Denticity ,Ligand ,General Chemical Engineering ,chemistry.chemical_element ,General Chemistry ,Copper ,Article ,chemistry.chemical_compound ,Crystallography ,Bipyridine ,Chemistry ,chemistry ,Pyridine ,Binding site ,QD1-999 - Abstract
Molecular switching processes are important in a range of areas including the development of molecular machines. While there are numerous organic switching systems available, there are far less examples that exploit inorganic materials. The most common inorganic switching system remains the copper(I)/copper(II) switch developed by Sauvage and co-workers over 20 years ago. Herein, we examine if bidentate 2-(1-benzyl-1H-1,2,3-triazol-4-yl)pyridine (pytri) and tridentate 2,6-bis[(4-phenyl-1H-1,2,3-triazol-1-yl)methyl]pyridine (tripy) moieties can be used to replace the more commonly exploited polypyridyl ligands 2,2′-bypyridine (bpy)/1,10-phenanthroline (phen) and 2,2′;6′,2″-terpyridine (terpy) in a copper(I)/(II) switching system. Two new ditopic ligands that feature bidentate (pytri, L1 or bpytri, L2) and tridentate tripy metal binding pockets were synthesized and used to generate a family of heteroleptic copper(I) and copper(II) 6,6′-dimesityl-2,2′-bipyridine (diMesbpy) complexes. Additionally, we synthesized a series of model copper(I) and copper(II) diMesbpy complexes. A combination of techniques including nuclear magnetic resonance (NMR) and UV–vis spectroscopies, high-resolution electrospray ionization mass spectrometry, and X-ray crystallography was used to examine the behavior of the compounds. It was found that L1 and L2 formed [(diMesbpy)Cu(L1 or L2)]2+ complexes where the copper(II) diMesbpy unit was coordinated exclusively in the tridenate tripy binding site. However, when the ligands (L1 and L2) were complexed with copper(I) diMesbpy units, a complex mixture was obtained. NMR and MS data indicated that a 1:1 stoichiometry of [Cu(diMesbpy)]+ and either L1 or L2 generated three complexes in solution, the dimetallic [(diMesbpy)2Cu2(L1 or L2)]2+ and the monometallic [(diMesbpy)Cu(L1 or L2)]+ isomers where the [Cu(diMesbpy)]+ unit is coordinated to either the bidentate or tridentate tripy binding sites of the ditopic ligands. The dimetallic [(diMesbpy)2Cu2(L1 or L2)](PF6)2 complexes were structurally characterized using X-ray crystallography. Both complexes feature a [Cu(diMesbpy)]+ coordinated to the bidentate (pytri or bpytri) pocket of the ditopic ligands (L1 or L2), as expected. They also feature a second [Cu(diMesbpy)]+ coordinated to the nominally tridentate tripy binding site in a four-coordinate hypodentate κ2-fashion. Competition experiments with model complexes showed that the binding strength of the bidentate pytri is similar to that of the κ2-tripy ligand, leading to the lack of selectivity. The results suggest that the pytri/tripy and bpytri/tripy ligand pairs cannot be used as replacements for the more common bpy/phen-terpy partners due to the lack of selectivity in the copper(I) state.
- Published
- 2021
27. Understanding the Effect of the Electron Spin Relaxation on the Relaxivities of Mn(II) Complexes with Triazacyclononane Derivatives
- Author
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Aurora Rodríguez-Rodríguez, Laura Valencia, Mauro Botta, Marcelino Maneiro, Daniela Lalli, Carlos Platas-Iglesias, David Esteban-Gómez, and Rocío Uzal-Varela
- Subjects
Inorganic Chemistry ,Paramagnetism ,Relaxometry ,Crystallography ,Octahedron ,Ligand ,Chemistry ,Relaxation (NMR) ,Proton NMR ,Molecule ,Physical and Theoretical Chemistry ,Zero field splitting ,Featured Article - Abstract
Investigating the relaxation of water 1H nuclei induced by paramagnetic Mn(II) complexes is important to understand the mechanisms that control the efficiency of contrast agents used in diagnostic magnetic resonance imaging (MRI). Herein, a series of potentially hexadentate triazacyclononane (TACN) derivatives containing different pendant arms were designed to explore the relaxation of the electron spin in the corresponding Mn(II) complexes by using a combination of 1H NMR relaxometry and theoretical calculations. These ligands include 1,4,7-triazacyclononane-1,4,7-triacetic acid (H3NOTA) and three derivatives in which an acetate group is replaced by sulfonamide (H3NO2ASAm), amide (H2NO2AM), or pyridyl (H2NO2APy) pendants. The analogue of H3NOTA containing three propionate pendant arms (H3NOTPrA) was also investigated. The X-ray structure of the derivative containing two acetate groups and a sulfonamide pendant arm [Mn(NO2ASAm)]− evidenced six-coordination of the ligand to the metal ion, with the coordination polyhedron being close to a trigonal prism. The relaxivities of all complexes at 20 MHz and 25 °C (1.1–1.3 mM–1 s–1) are typical of systems that lack water molecules coordinated to the metal ion. The nuclear magnetic relaxation profiles evidence significant differences in the relaxivities of the complexes at low fields (, The nature of the donor atoms and particularly the coordination polyhedron affect dramatically the zero field splitting in six-coordinate Mn(II) complexes, which has a strong impact in the relaxivities measured at low magnetic fields.
- Published
- 2021
28. Tau Protein Binding Modes in Alzheimer’s Disease for Cationic Luminescent Ligands
- Author
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Camilla Gustafsson, Patrick Norman, Mathieu Linares, Therése Klingstedt, Carolin König, Ruben Vidal, Ingrid Ertzgaard, Yogesh Todarwal, K. Peter R. Nilsson, Bernardino Ghetti, Nghia Nguyen Thi Minh, and Mikael Lindgren
- Subjects
Fluorescence-lifetime imaging microscopy ,Amyloid ,Biophysics ,tau Proteins ,Fibril ,Ligands ,Article ,03 medical and health sciences ,Molecular dynamics ,0302 clinical medicine ,Pick Disease of the Brain ,Alzheimer Disease ,Materials Chemistry ,Humans ,Physical and Theoretical Chemistry ,Binding site ,030304 developmental biology ,0303 health sciences ,Chemistry ,Ligand ,Cationic polymerization ,Biofysik ,3. Good health ,Surfaces, Coatings and Films ,030217 neurology & neurosurgery ,Tau protein binding ,Protein Binding - Abstract
The bi-thiophene-vinylene-benzothiazole (bTVBT4) ligand developed for Alzheimers disease (AD)-specific detection of amyloid tau has been studied by a combination of several theoretical methods and experimental spectroscopies. With reference to the cryo-EM tau structure of the tau protofilament (Nature 2017, 547, 185), a periodic model system of the fibril was created, and the interactions between this fibril and bTVBT4 were studied with nonbiased molecular dynamics simulations. Several binding sites and binding modes were identified and analyzed, and the results for the most prevailing fibril site and ligand modes are presented. A key validation of the simulation work is provided by the favorable comparison of the theoretical and experimental absorption spectra of bTVBT4 in solution and bound to the protein. It is conclusively shown that the ligand-protein binding occurs at the hydrophobic pocket defined by the residues Ile360, Thr361, and His362. This binding site is not accessible in the Picks disease (PiD) fold, and fluorescence imaging of bTVBT4-stained brain tissue samples from patients diagnosed with AD and PiD provides strong support for the proposed tau binding site. Funding Agencies|European CommissionEuropean CommissionEuropean Commission Joint Research Centre [765739]; Swedish Research CouncilSwedish Research CouncilEuropean Commission [2018-4343, 2016-07213]; Swedish e-Science Research Centre (SeRC); German Research FoundationGerman Research Foundation (DFG) [KO 5423/1-1]; U.S. National Institutes of HealthUnited States Department of Health & Human ServicesNational Institutes of Health (NIH) - USA [UO1NS110437]
- Published
- 2021
29. Tuning Ligand Concentration in Cu(0)-RDRP: A Simple Approach to Control Polymer Dispersity
- Author
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Richard Whitfield, Nghia P. Truong, Athina Anastasaki, and Takanori Shimizu
- Subjects
chemistry.chemical_classification ,Ligand ,Dispersity Control ,Dispersity ,02 engineering and technology ,General Medicine ,Polymer ,010402 general chemistry ,021001 nanoscience & nanotechnology ,01 natural sciences ,Molecular Weight Distributions ,Article ,0104 chemical sciences ,Cu(0)-RDRP ,Block Copolymers ,Ligand Concentration ,TP1080-1185 ,chemistry ,Chemical engineering ,Simple (abstract algebra) ,Polymers and polymer manufacture ,0210 nano-technology - Abstract
Cu(0)-reversible deactivation radical polymerization (RDRP) is a versatile polymerization tool, providing rapid access to well-defined polymers while utilizing mild reaction conditions and low catalyst loadings. However, thus far, this method has not been applied to tailor dispersity, a key parameter that determines the physical properties and applications of polymeric materials. Here, we report a simple to perform method, whereby Cu(0)-RDRP can systematically control polymer dispersity (Đ = 1.07–1.72), while maintaining monomodal molecular weight distributions. By varying the ligand concentration, we could effectively regulate the rates of initiation and deactivation, resulting in polymers of various dispersities. Importantly, both low and high dispersity PMA possess high end-group fidelity, as evidenced by MALDI-ToF-MS, allowing for a range of block copolymers to be prepared with different dispersity configurations. The scope of our method can also be extended to include inexpensive ligands (i.e., PMDETA), which also facilitated the polymerization of lower propagation rate constant monomers (i.e., styrene) and the in situ synthesis of block copolymers. This work significantly expands the toolbox of RDRP methods for tailoring dispersity in polymeric materials., ACS Polymers Au, 1 (3), ISSN:2694-2453
- Published
- 2021
30. Heavy-Atom Free spiro Organoboron Complexes As Triplet Excited States Photosensitizers for Singlet Oxygen Activation
- Author
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Klaudia Paplińska, Paulina H. Marek-Urban, Krzysztof Durka, Agata Blacha-Grzechnik, Mateusz Urban, Magdalena Wiklińska, and Krzysztof Woźniak
- Subjects
Photosensitizing Agents ,Molecular Structure ,Singlet Oxygen ,Ligand ,Chemistry ,Singlet oxygen ,Organic Chemistry ,Photochemistry ,Ligands ,Article ,chemistry.chemical_compound ,Intersystem crossing ,Excited state ,Atom ,Moiety ,Singlet state ,Triplet state ,Oxidation-Reduction - Abstract
Herein, we present a new strategy for the development of efficient heavy-atom free singlet oxygen photosensitizers based on rigid borafluorene scaffolds. Physicochemical properties of borafluorene complexes can be easily tuned through the choice of ligand, thus allowing exploration of numerous organoboron structures as potent 1O2 sensitizers. The singlet oxygen generation quantum yields of studied complexes vary in the range of 0.55-0.78. Theoretical calculations reveal that the introduction of the borafluorene moiety is crucial for the stabilization of a singlet charge transfer state, while intersystem crossing to a local triplet state is facilitated by orthogonal donor-acceptor molecular architecture. Our study shows that quantitative oxidation of selected organic substrates can be achieved in 20-120 min of irradiation with only 0.05 mol % loading of a photocatalyst.
- Published
- 2021
31. Alkyl-Substituted Aminobis(phosphonates)Efficient Precipitating Agents for Rare Earth Elements, Thorium, and Uranium in Aqueous Solutions
- Author
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Jani O. Moilanen, Ari Väisänen, Emilia J. Virtanen, Kaisa Helttunen, and Siiri Perämäki
- Subjects
Lanthanide ,Aqueous solution ,Ligand ,General Chemical Engineering ,Inorganic chemistry ,chemistry.chemical_element ,02 engineering and technology ,General Chemistry ,010402 general chemistry ,021001 nanoscience & nanotechnology ,01 natural sciences ,Phosphonate ,0104 chemical sciences ,Separation process ,chemistry.chemical_compound ,Chemistry ,Deprotonation ,chemistry ,Titration ,Scandium ,0210 nano-technology ,QD1-999 - Abstract
The efficient and environmentally sustainable separation process for rare earth elements (REE), especially for adjacent lanthanoids, remains a challenge due to the chemical similarity of REEs. Tetravalent actinoids, thorium, and traces of uranium are also present in concentrates of REEs, making their separation relevant. This study reports six simple water-soluble aminobis(phosphonate) ligands, RN[CH2P(O)(OH)2]2 (1 R = CH2CH3, 2 R = (CH2)2CH3, 3 R = (CH2)3CH3, 4 R = (CH2)4CH3, 5 R = (CH2)5CH3, 6 R = CH2CH(C2H5)(CH2)3CH3) as precipitating agents for REEs, Th, and U, as well as gives insight into the coordination modes of the utilized ligands with REEs at the molecular level. Aminobis(phosphonates) 4-6 with longer carbon chains were found to separate selectively thorium, uranium, and scandium from REEs with short precipitation time (15 min) and excellent separation factors that generally range from 100 to 2000 in acidic aqueous solution. Ligands 1-6 also improved separation factors for adjacent lanthanoids in comparison to traditional oxalate precipitation agents. Importantly, precipitated metals can be recovered from the ligands with 3 molar HNO3 with no observed ligand decomposition enabling the possibility of recycling the ligands in the separation process. NMR-monitored pH titrations for 1 showed deprotonation steps at pKa 1.3, 5.55, and >10.5, which indicate that the ligands remain in a deprotonated [L]-1 form in the pH range of 0-4 used in the precipitation studies. 31P NMR titration studies between 1 and M(NO3)3 (M = Y, La, Lu) gave satisfactory fits for 1:3, 1:2, and 1:1 metal-ligand stoichiometries for Y, La, and Lu, respectively, according to an F-test. Therefore, aminobis(phosphonate) precipitation agents 1-6 are likely to form metal complexes with fewer ligands than traditional separation agents like DEHPA, which coordinates to REEs in 1:6 metal-ligand ratio.
- Published
- 2021
32. Compensation Effect Exhibited by Gold Bimetallic Nanoparticles during CO Oxidation
- Author
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Joe Brindle and Michael M. Nigra
- Subjects
Materials science ,Diffuse reflectance infrared fourier transform ,Ligand ,General Chemical Engineering ,Entropy of activation ,Nanoparticle ,General Chemistry ,Catalysis ,Metal ,chemistry.chemical_compound ,Chemistry ,chemistry ,visual_art ,visual_art.visual_art_medium ,Physical chemistry ,Triphenylphosphine ,Bimetallic strip ,QD1-999 - Abstract
While CO oxidation catalyzed by gold nanoparticles has been practiced academically for several decades, there are still important discoveries to be made. One area of current interest is to pair Au with another alloying metal and observe the catalytic consequences of the presence of the other metal. In this work, TiO2-supported bimetallic Au nanoparticles are alloyed with Cu, Co, Ni, Pd, and Ru and used as catalysts for CO oxidation. Two synthetic methods for the alloys are presented: a strong electrostatic adsorption (SEA) method and a sterically demanding ligand synthesis (SDLS) method which uses triphenylphosphine (TPP) as the ligand. The catalytic performance of the materials synthesized with the SEA and SDLS methods is compared in CO oxidation. The results indicate that the materials tested present an enthalpy-entropy compensation effect. Interestingly, both the enthalpy of activation, ΔH‡, and the entropy of activation, ΔS‡, generally decrease with particle size. AuCo and AuRu materials exhibit a decrease in the overall activity as compared to Au and the other Au alloys when synthesized via SEA. Au face-centered-cubic alloys AuCu, AuNi, and AuPd prepared via SEA show an improvement in activity compared to monometallic Au in our reaction conditions. In situ diffuse reflectance infrared Fourier transform spectroscopy presents two distinct regions for Au bimetallics where AuCo and AuRu show peak positions in the region of 2070-2050 cm-1, indicating a weaker interaction for AuCo and AuRu with CO when compared to that of the other alloys. For the SDLS method samples, the hypothesis is that TPP would enhance the CO oxidation rate by enhancing the charge transfer to the metallic surface. The results indicate that SDLS samples have lower CO oxidation rates and if any charge transfer occurs, it is masked by the lateral interactions of the CO π bonds and the phenyl groups of TPP.
- Published
- 2021
33. Comparing Metal–Halide and −Oxygen Adducts in Oxidative C/O–H Activation: AuIII–Cl versus AuIII–OH
- Author
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Brendan Twamley, Aidan R. McDonald, Robert Gericke, and Marta Lovisari
- Subjects
010405 organic chemistry ,Ligand ,Halide ,chemistry.chemical_element ,Oxidative phosphorylation ,Hydrogen atom ,010402 general chemistry ,01 natural sciences ,Medicinal chemistry ,Oxygen ,Article ,3. Good health ,0104 chemical sciences ,Adduct ,Inorganic Chemistry ,Metal ,chemistry ,visual_art ,Transfer mechanism ,visual_art.visual_art_medium ,Physical and Theoretical Chemistry - Abstract
High-valent metal–halides have come to prominence as highly effective oxidants. A direct comparison of their efficacy against that of traditional metal–oxygen adducts is needed. [AuIII(Cl)(terpy)](ClO4)2 (1; terpy = 2,2′:6′,2-terpyridine) readily oxidized substrates bearing O–H and C–H bonds via a hydrogen atom transfer mechanism. A direct comparison with [AuIII(OH)(terpy)](ClO4)2 (2) showed that 1 was a kinetically superior oxidant with respect to 2 for all substrates tested. We ascribe this to the greater thermodynamic driving force imbued by the Cl ligand versus the OH ligand., We report a direct comparison of the efficacy of metal−halide oxidants to those of traditional metal−oxygen adducts. AuIII−Cl and AuIII−OH oxidants, supported by the same ancillary ligand, readily oxidized substrates via a hydrogen atom transfer mechanism. The AuIII−Cl oxidant was kinetically superior for all substrates. We ascribed this to the greater thermodynamic driving force imbued by the Cl ligand versus the OH ligand.
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- 2021
34. New Volatile Tantalum Imido Precursors with Carboxamide Ligands
- Author
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Bo Keun Park, Taek-Mo Chung, Sung Kwang Lee, Sunyoung Shin, Jeong Min Hwang, Hae Sun Kim, Ji Yeon Ryu, Ji-Seoung Jeong, Taeyong Eom, and Chang Gyoun Kim
- Subjects
Thermogravimetric analysis ,Denticity ,Chemistry ,medicine.drug_class ,Ligand ,General Chemical Engineering ,Carboxamide ,General Chemistry ,Nuclear magnetic resonance spectroscopy ,Medicinal chemistry ,Article ,chemistry.chemical_compound ,Pentagonal bipyramidal molecular geometry ,Pyridine ,medicine ,Fourier transform infrared spectroscopy ,QD1-999 - Abstract
A series of Ta(V) t Bu-imido/N-alkoxy carboxamide complexes, TaCl2(N t Bu)(pyridine)(edpa) (1), TaCl(N t Bu)(edpa)2 (2), Ta(N t Bu)(edpa)3 (3), TaCl2(N t Bu)(pyridine)(mdpa) (4), and Ta(N t Bu)(mdpa)3 (5), were successfully synthesized by metathesis reactions between Ta(N t Bu)Cl3(py)2 and several equivalents of Na(edpa) (edpaH = N-ethoxy-2,2-dimethylpropanamide) and Na(mdpa) (mdpaH = N-methoxy-2,2-dimethylpropanamide). Furthermore, complexes 3 and 5 were simply transformed to new dimeric structures [Ta(μ2-O)(edpa)3]2 (6) and [Ta(μ2-O)(mdpa)3]2 (7) with the elimination of the N t Bu imido group by air exposure. Compounds 1-7 were characterized by 1H and 13C nuclear magnetic resonance spectroscopy, Fourier transform infrared spectroscopy, elemental analysis, thermogravimetric analysis (TGA), and single-crystal X-ray diffraction. Single-crystal X-ray diffraction analysis revealed that complexes 3 and 5 have a distorted pentagonal bipyramidal geometry around the central Ta atom, with three monoanionic bidentate N-alkoxy carboxamide ligands and one t Bu imido ligand saturating the coordination of tantalum ions. TGA revealed that complexes 3 and 5 had superior thermal characteristics and stability. These complexes could potentially be applied as precursors for tantalum oxide thin films.
- Published
- 2021
35. Insights into the Observed trans-Bond Length Variations upon NO Binding to Ferric and Ferrous Porphyrins with Neutral Axial Ligands
- Author
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Erwin G. Abucayon, Douglas R. Powell, George B. Richter-Addo, Yong Zhang, and Rahul L. Khade
- Subjects
Spin states ,Ligand ,Trans effect ,Chemistry ,General Chemical Engineering ,General Chemistry ,Antibonding molecular orbital ,Ferrous ,Bond length ,Crystallography ,medicine ,Ferric ,Density functional theory ,QD1-999 ,medicine.drug - Abstract
NO is well-known for its trans effect. NO binding to ferrous hemes of the form (por)Fe(L) (L = neutral N-based ligand) to give the {FeNO}7 (por)Fe(NO)(L) product results in a lengthening of the axial trans Fe-L bond. In contrast, NO binding to the ferric center in [(por)Fe(L)]+ to give the {FeNO}6 [(por)Fe(NO)(L)]+ product results in a shortening of the trans Fe-L bond. NO binding to both ferrous and ferric centers involves the lowering of their spin states. Density functional theory (DFT) calculations were used to probe the experimentally observed trans-bond shortening in some NO adducts of ferric porphyrins. We show that the strong σ antibonding interaction of d z2 and the axial (L) ligand p orbitals present in the Fe(II) systems is absent in the Fe(III) systems, as it is now in an unoccupied orbital. This feature, combined with a lowering of spin state upon NO binding, provides a rationale for the observed net trans-bond shortening in the {FeNO}6 but not the {FeNO}7 derivatives.
- Published
- 2021
36. Directing Intrinsic Chirality in Gold Nanoclusters: Preferential Formation of Stable Enantiopure Clusters in High Yield and Experimentally Unveiling the "Super" Chirality of Au 144 .
- Author
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Truttmann V, Loxha A, Banu R, Pittenauer E, Malola S, Matus MF, Wang Y, Ploetz EA, Rupprechter G, Bürgi T, Häkkinen H, Aikens C, and Barrabés N
- Abstract
Chiral gold nanoclusters offer significant potential for exploring chirality at a fundamental level and for exploiting their applications in sensing and catalysis. However, their widespread use is impeded by low yields in synthesis, tedious separation procedures of their enantiomeric forms, and limited thermal stability. In this study, we investigated the direct synthesis of enantiopure chiral nanoclusters using the chiral ligand 2-MeBuSH in the fabrication of Au
25 , Au38 , and Au144 nanoclusters. Notably, this approach leads to the unexpected formation of intrinsically chiral clusters with high yields for chiral Au38 and Au144 nanoclusters. Experimental evaluation of chiral activity by circular dichroism (CD) spectroscopy corroborates previous theoretical calculations, highlighting the stronger CD signal exhibited by Au144 compared to Au38 or Au25 . Furthermore, the formation of a single enantiomeric form is experimentally confirmed by comparing it with intrinsically chiral Au38 (2-PET)24 (2-PET: 2-phenylethanethiol) and is supported theoretically for both Au38 and Au144 . Moreover, the prepared chiral clusters show stability against diastereoisomerization, up to temperatures of 80 °C. Thus, our findings not only demonstrate the selective preparation of enantiopure, intrinsically chiral, and highly stable thiolate-protected Au nanoclusters through careful ligand design but also support the predicted "super" chirality in the Au144 cluster, encompassing hierarchical chirality in ligands, staple configuration, and core structure.- Published
- 2023
- Full Text
- View/download PDF
37. Engineering of an Optogenetic T Cell Receptor Compatible with Fluorescence-Based Readouts.
- Author
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Idstein V, Ehret AK, Yousefi OS, and Schamel WW
- Subjects
- Light, Optogenetics methods, Ligands, Phytochrome B genetics, Phytochrome B metabolism, Receptors, Antigen, T-Cell genetics, Receptors, Antigen, T-Cell metabolism, Arabidopsis Proteins genetics, Arabidopsis Proteins metabolism, Arabidopsis genetics, Arabidopsis metabolism, Phytochrome metabolism
- Abstract
Optogenetics offers a set of tools for the precise manipulation of signaling pathways. Here we exploit optogenetics to experimentally change the kinetics of protein-protein interactions on demand. We had developed a system in which the interaction of a modified T cell receptor (TCR) with an engineered ligand can be controlled by light. The ligand was the plant photoreceptor phytochrome B (PhyB) and the TCR included a TCRβ chain fused to GFP and a mutated PhyB-interacting factor (PIF
S ), resulting in the GFP-PIFS -TCR. We failed to engineer a nonfluorescent PIFS -fused TCR, since PIFS did not bind to PhyB when omitting GFP. Here we tested nine different versions of PIFS -fused TCRs. We found that the SNAP-PIFS -TCR was expressed well on the surface, bound to PhyB, and subsequently elicited activation signals. This receptor could be combined with a GFP reporter system in which the expression of GFP is driven by the transcription factor NF-AT.- Published
- 2023
- Full Text
- View/download PDF
38. Chemical Acetylation of Ligands and Two-Step Digestion Protocol for Reducing Codigestion in Affinity Purification-Mass Spectrometry.
- Author
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Hollenstein DM, Maurer-Granofszky M, Reiter W, Anrather D, Gossenreiter T, Babic R, Hartl N, Kraft C, and Hartl M
- Abstract
We present an effective, fast, and user-friendly method to reduce codigestion of bead-bound ligands, such as antibodies or streptavidin, in affinity purification-mass spectrometry experiments. A short preincubation of beads with Sulfo-NHS-Acetate leads to chemical acetylation of lysine residues, making ligands insusceptible to Lys-C-mediated proteolysis. In contrast to similar approaches, our procedure offers the advantage of exclusively using nontoxic chemicals and employing mild chemical reaction conditions. After binding of bait proteins to Sulfo-NHS-Acetate treated beads, we employ a two-step digestion protocol with the sequential use of Lys-C protease for on-bead digestion followed by in-solution digestion of the released proteins with trypsin. The implementation of this protocol results in a strong reduction of contaminating ligand peptides, which allows significantly higher amounts of sample to be subjected to LC-MS analysis, improving sensitivity and quantitative accuracy.
- Published
- 2023
- Full Text
- View/download PDF
39. Controlling Radical-Type Single-Electron Elementary Steps in Catalysis with Redox-Active Ligands and Substrates
- Author
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Minghui Zhou, Felix J. de Zwart, Bas de Bruin, Nicolaas P. van Leest, and Homogeneous and Supramolecular Catalysis (HIMS, FNWI)
- Subjects
catalysis ,Ligand ,spin state ,Nitrene ,Radical ,chemistry.chemical_element ,radical-type reactivity ,Combinatorial chemistry ,Redox ,Catalysis ,chemistry.chemical_compound ,Chemistry ,chemistry ,Perspective ,(electronic) structure ,Reactivity (chemistry) ,redox-active ligands and substrates ,Carbene ,Cobalt ,QD1-999 - Abstract
Advances in (spectroscopic) characterization of the unusual electronic structures of open-shell cobalt complexes bearing redox-active ligands, combined with detailed mapping of their reactivity, have uncovered several new catalytic radical-type protocols that make efficient use of the synergistic properties of redox-active ligands, redox-active substrates, and the metal to which they coordinate. In this perspective, we discuss the tools available to study, induce, and control catalytic radical-type reactions with redox-active ligands and/or substrates, contemplating recent developments in the field, including some noteworthy tools, methods, and reactions developed in our own group. The main topics covered are (i) tools to characterize redox-active ligands; (ii) novel synthetic applications of catalytic reactions that make use of redox-active carbene and nitrene substrates at open-shell cobalt-porphyrins; (iii) development of catalytic reactions that take advantage of purely ligand- and substrate-based redox processes, coupled to cobalt-centered spin-changing events in a synergistic manner; and (iv) utilization of redox-active ligands to influence the spin state of the metal. Redox-active ligands have emerged as useful tools to generate and control reactive metal-coordinated radicals, which give access to new synthetic methodologies and intricate (electronic) structures, some of which are yet to be exposed.
- Published
- 2021
40. Reactivity of a Dinuclear PdI Complex [Pd2(μ-PPh2)(μ2-OAc)(PPh3)2] with PPh3: Implications for Cross-Coupling Catalysis Using the Ubiquitous Pd(OAc)2/nPPh3 Catalyst System
- Author
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Mark James Ford, David R. Husbands, Neil W. J. Scott, Adrian C. Whitwood, and Ian J. S. Fairlamb
- Subjects
Ligand ,Chemistry ,Organic Chemistry ,Disproportionation ,Coupling (probability) ,Oxidative addition ,Medicinal chemistry ,Article ,Catalysis ,Inorganic Chemistry ,Oxidation state ,Cluster (physics) ,Reactivity (chemistry) ,Physical and Theoretical Chemistry - Abstract
[PdI2(μ-PPh2)(μ2-OAc)(PPh3)2] is the reduction product of PdII(OAc)2(PPh3)2, generated by reaction of 'Pd(OAc)2' with two equivalents of PPh3. Here, we report that the reaction of [PdI2(μ-PPh2)(μ2-OAc)(PPh3)2] with PPh3 results in a nuanced disproportionation reaction, forming [Pd0(PPh3)3] and a phosphinito-bridged PdI-dinuclear complex, namely [PdI2(μ-PPh2){κ2-P,O-μ-P(O)Ph2}(κ-PPh3)2]. The latter complex is proposed to form by abstraction of an oxygen atom from an acetate ligand at Pd. A mechanism for the formal reduction of a putative PdII disproportionation species to the observed PdI complex is postulated. Upon reaction of the mixture of [Pd0(PPh)3] and [PdI2(μ-PPh2){κ2-P,O-μ-P(O)Ph2}(κ-PPh3)2] with 2-bromopyridine, the former Pd0 complex undergoes a fast oxidative addition reaction, while the latter dinuclear PdI complex converts slowly to a tripalladium cluster, of the type [Pd3(μ-X)(μ-PPh2)2(PPh3)3]X, with an overall 4/3 oxidation state per Pd. Our findings reveal complexity associated with the precatalyst activation step for the ubiquitous 'Pd(OAc)2'/nPPh3 catalyst system, with implications for cross-coupling catalysis.
- Published
- 2021
41. Manganese-Pincer-Catalyzed Nitrile Hydration, α-Deuteration, and α-Deuterated Amide Formation via Metal Ligand Cooperation
- Author
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Quan-Quan Zhou, Sayan Kar, David Milstein, Yehoshoa Ben-David, You-Quan Zou, and Yael Diskin-Posner
- Subjects
Letter ,Nitrile ,010405 organic chemistry ,Ligand ,chemistry.chemical_element ,General Chemistry ,Manganese ,010402 general chemistry ,01 natural sciences ,Toluene ,Medicinal chemistry ,Catalysis ,α-deuteration ,0104 chemical sciences ,Pincer movement ,Solvent ,chemistry.chemical_compound ,manganese pincer complex ,chemistry ,metal−ligand cooperation ,Amide ,nitriles ,hydration - Abstract
A simple and efficient system for the hydration and α-deuteration of nitriles to form amides, α-deuterated nitriles, and α-deuterated amides catalyzed by a single pincer complex of the earth-abundant manganese capable of metal-ligand cooperation is reported. The reaction is selective and tolerates a wide range of functional groups, giving the corresponding amides in moderate to good yields. Changing the solvent from tert-butanol to toluene and using D2O results in formation of α-deuterated nitriles in high selectivity. Moreover, α-deuterated amides can be obtained in one step directly from nitriles and D2O in THF. Preliminary mechanistic studies suggest the transformations contributing toward activation of the nitriles via a metal-ligand cooperative pathway, generating the manganese ketimido and enamido pincer complexes as the key intermediates for further transformations.
- Published
- 2021
42. d‑Glucosamine as the Green Ligand for Cu(I)-Catalyzed Regio- and Stereoselective Domino Synthesis of (Z)‑3-Methyleneisoindoline-1-ones and (E)‑N‑Aryl‑4H‑thiochromen-4-imines
- Author
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Anoop S. Singh, Anand K. Agrahari, Vinod K. Tiwari, Sunil Kumar, Sumit K. Singh, Mangal S. Yadav, and Nidhi Mishra
- Subjects
Chemistry ,Ligand ,General Chemical Engineering ,Aryl ,Heteroatom ,Sonogashira coupling ,General Chemistry ,Triple bond ,Combinatorial chemistry ,Catalysis ,chemistry.chemical_compound ,Cascade reaction ,Yield (chemistry) ,QD1-999 - Abstract
d-Glucosamine, a natural, inexpensive, and conveniently accessible sugar, has been explored as an efficient ligand for the Cu(I)-catalyzed regio- and stereoselective synthesis of an array of (Z)-3-methyleneisoindoline-1-ones and (E)-N-aryl-4H-thiochromen-4-imines in good-to-excellent yield in a tandem fashion via the reaction of 2-halobenzamide and 2-halobenzothioamide with terminal alkynes, respectively. The water solubility and biocompatible nature of the ligand offer easy separation of the catalytic system toward the aqueous phase as well as change in the reaction path in terms of the product also demonstrated the variation of the reaction temperature. The domino reaction proceeds by the Sonogashira and Ullmann type cross-coupling reaction, followed by Cu(I)-promoted additive cyclization of heteroatom to the triple bond. In addition, d-glucosamine causes successful Glaser-Hay coupling of terminal alkynes under Cu catalysis to produce a high yield of respective 1,3-diynes.
- Published
- 2021
43. Modulation of Siglec‑7 Signaling Via In Situ-Created High-Affinity cis-Ligands
- Author
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James C. Paulson, Senlian Hong, Kelley W. Moremen, Tao Gao, Chenhua Yu, Emily Rodrigues, Matthew S. Macauley, Yujie Shi, Hongmin Chen, Peng Wang, Ruoxuan Zhuang, Digantkumar Chapla, and Peng Wu
- Subjects
Glycan ,General Chemical Engineering ,Cell ,Inhibitory postsynaptic potential ,01 natural sciences ,Immunological synapse ,03 medical and health sciences ,Immune system ,medicine ,Cytotoxicity ,QD1-999 ,030304 developmental biology ,0303 health sciences ,biology ,010405 organic chemistry ,Chemistry ,Ligand ,SIGLEC ,General Chemistry ,respiratory system ,3. Good health ,0104 chemical sciences ,Cell biology ,medicine.anatomical_structure ,biology.protein - Abstract
Sialic acid-binding immunoglobulin-like lectins, also known as Siglecs, have recently been designated as glyco-immune checkpoints. Through their interactions with sialylated glycan ligands overexpressed on tumor cells, inhibitory Siglecs on innate and adaptive immune cells modulate signaling cascades to restrain anti-tumor immune responses. However, the elucidation of the mechanisms underlying these processes is just beginning. We find that when human natural killer (NK) cells attack tumor cells, glycan remodeling occurs on the target cells at the immunological synapse. This remodeling occurs through both the transfer of sialylated glycans from NK cells to target tumor cells and the accumulation of de novo synthesized sialosides on the tumor cells. The functionalization of NK cells with a high-affinity ligand of Siglec-7 leads to multifaceted consequences in modulating a Siglec-7-regulated NK-activation. At high levels of ligand, an enzymatically added Siglec-7 ligand suppresses NK cytotoxicity through the recruitment of Siglec-7 to an immune synapse, whereas at low levels of ligand an enzymatically added Siglec-7 ligand triggers the release of Siglec-7 from the cell surface into the culture medium, preventing a Siglec-7-mediated inhibition of NK cytotoxicity. These results suggest that a glycan engineering of NK cells may provide a means to boost NK effector functions for related applications.
- Published
- 2021
44. Self-Adaptable Tropos Catalysts
- Author
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Christina Moberg, Montserrat Diéguez, and Oscar Pàmies
- Subjects
Chemical process ,Flexibility (engineering) ,Tsuji–Trost reaction ,Molecular recognition ,Catalytic cycle ,Chemistry ,Ligand ,Substrate (chemistry) ,General Medicine ,General Chemistry ,Combinatorial chemistry ,Article ,Catalysis - Abstract
Conspectus Biological systems have often served as inspiration for the design of synthetic catalysts. The lock and key analogy put forward by Emil Fischer in 1894 to explain the high substrate specificity of enzymes has been used as a general guiding principle aimed at enhancing the selectivity of chemical processes by optimizing attractive and repulsive interactions in molecular recognition events. However, although a perfect fit of a substrate to a catalytic site may enhance the selectivity of a specific catalytic reaction, it inevitably leads to a narrow substrate scope, excluding substrates with different sizes and shapes from efficient binding. An ideal catalyst should instead be able to accommodate a wide range of substrates—it has indeed been recognized that enzymes also are often highly promiscuous as a result of their ability to change their conformation and shape in response to a substrate—and preferentially be useful in various types of processes. In biological adaptation, the process by which species become fitted to new environments is crucial for their ability to cope with changing environmental conditions. With this in mind, we have been exploring catalytic systems that can adapt their size and shape to the environment with the goal of developing synthetic catalysts with wide scope. In this Account, we describe our studies aimed at elucidating how metal catalysts with flexible structural units adapt their binding pockets to the reacting substrate. Throughout our studies, ligands equipped with tropos biaryl units have been explored, and the palladium-catalyzed allylic alkylation reaction has been used as a suitable probe to study the adaptability of the catalytic systems. The conformations of catalytically active metal complexes under different conditions have been studied by both experimental and theoretical methods. By the design of ligands incorporating two flexible units, the symmetry properties of metal complexes could be used to facilitate conformational analysis and thereby provide valuable insight into the structures of complexes involved in the catalytic cycle. The importance of flexibility was convincingly demonstrated when a phosphine group in a privileged ligand that is well-known for its versatility in a number of processes was exchanged for a tropos biaryl phosphite unit: the result was a truly self-adaptive ligand with dramatically increased scope.
- Published
- 2021
45. Machine Learning and Enhanced Sampling Simulations for Computing the Potential of Mean Force and Standard Binding Free Energy
- Author
-
Dorothea Gobbo, Martina Bertazzo, Andrea Cavalli, Sergio Decherchi, Bertazzo M., Gobbo D., Decherchi S., and Cavalli A.
- Subjects
Bridged-Ring Compounds ,Computer science ,Computation ,Ligand ,Molecular Dynamics Simulation ,Machine learning ,computer.software_genre ,Ligands ,Article ,Machine Learning ,Molecular dynamics ,Thermodynamic ,Limit (mathematics) ,Physical and Theoretical Chemistry ,Potential of mean force ,Imidazole ,Glycogen Synthase Kinase 3 beta ,business.industry ,Imidazoles ,Computer Science Applications ,Bridged-Ring Compound ,Variable (computer science) ,Path (graph theory) ,Thermodynamics ,Artificial intelligence ,business ,computer ,Energy (signal processing) ,Free parameter ,Protein Binding - Abstract
Computational capabilities are rapidly increasing, primarily because of the availability of GPU-based architectures. This creates unprecedented simulative possibilities for the systematic and robust computation of thermodynamic observables, including the free energy of a drug binding to a target. In contrast to calculations of relative binding free energy, which are nowadays widely exploited for drug discovery, we here push the boundary of computing the binding free energy and the potential of mean force. We introduce a novel protocol that leverages enhanced sampling, machine learning, and ad hoc algorithms to limit human intervention, computing time, and free parameters in free energy calculations. We first validate the method on a host-guest system, and then we apply the protocol to glycogen synthase kinase 3 beta, a protein kinase of pharmacological interest. Overall, we obtain a good correlation with experimental values in relative and absolute terms. While we focus on protein-ligand binding, the strategy is of broad applicability to any complex event that can be described with a path collective variable. We systematically discuss key details that influence the final result. The parameters and simulation settings are available at PLUMED-NEST to allow full reproducibility.
- Published
- 2021
46. Cationic Cycloheptatrienyl Cyclopentadienyl Manganese Sandwich Complexes: Tromancenium Explored with High-Power LED Photosynthesis
- Author
-
Maren Podewitz, Larissa A. Casper, Selina Olthof, Stefan Vanicek, Reinhard Basse, Benno Bildstein, Moritz Nau, Thomas Müller, Holger Kopacka, Rainer F. Winter, Heidi A. Schwartz, Klaus Wurst, and Thomas S. Hofer
- Subjects
chemistry.chemical_classification ,Chemistry ,Ligand ,Organic Chemistry ,Cationic polymerization ,chemistry.chemical_element ,Manganese ,Chemical reaction ,Article ,Inorganic Chemistry ,Transition metal ,Cyclopentadienyl complex ,Polymer chemistry ,ddc:540 ,Physical and Theoretical Chemistry ,HOMO/LUMO ,Alkyl - Abstract
In this contribution, we revisit the neglected and forgotten cationic, air-stable, 18-valence electron, heteroleptic sandwich complex (cycloheptatrienyl)(cyclopentadienyl)manganese, which was reported independently by Fischer and by Pauson about 50 years ago. Using advanced high-power LED photochemical synthesis, an expedient rapid access to the parent complex and to functionalized derivatives with alkyl, carboxymethyl, bromo, and amino substituents was developed. A thorough study of these "tromancenium" salts by a range of spectroscopic techniques (1H/13C/55Mn-NMR, IR, UV-vis, HRMS, XRD, XPS, EPR), cyclic voltammetry (CV), and quantum chemical calculations (DFT) shows that these manganese sandwich complexes are unique metallocenes with quite different chemical and physical properties in comparison to those of isoelectronic cobaltocenium salts or (cycloheptatrienyl)(cyclopentadienyl) sandwich complexes of the early transition metals. Electrochemically, all tromancenium ions undergo a chemically partially reversible oxidation and a chemically irreversible reduction at half-wave or peak potentials that respond to the substituents at the Cp deck. As exemplarily shown for the parent tromancenium ion, the product generated during the irreversible reduction process reverts at least partially to the starting material upon reoxidation. Quantum-chemical calculations of the parent tromancenium salt indicate that metal-ligand bonding is distinctly weaker for the cycloheptatrienyl ligand in comparison to that of the cyclopentadienyl ligand. Both the HOMO and the LUMO are metal and cycloheptatrienyl-ligand centered, indicating that chemical reactions will occur either metal-based or at the seven-membered ring, but not on the cyclopentadienyl ligand. published
- Published
- 2021
47. Redox Activity of Noninnocent 2,2′-Bipyridine in Zinc Complexes: An Experimental and Theoretical Study
- Author
-
Stephan Schulz, Blaise L. Geoghegan, Christoph Wölper, Bin Li, and George E. Cutsail
- Subjects
Ligand ,General Chemical Engineering ,Chemie ,General Chemistry ,Bite angle ,Article ,2,2'-Bipyridine ,law.invention ,Bond length ,chemistry.chemical_compound ,Crystallography ,Bipyridine ,Chemistry ,chemistry ,law ,Electron paramagnetic resonance ,HOMO/LUMO ,QD1-999 ,Natural bond orbital - Abstract
We report on a systematical reactivity study of β-diketiminate zinc complexes with redox-active 2,2′-bipyridine (bpy). The reaction of LZnI (L = HC[C(Me)N(2,6-iPr2C6H3)]2) with NaB(C6F5)4 in the presence of bpy yielded [LZn(bpy)][B(C6F5)4] (1), with bpy serving as a neutral ligand, whereas reduction reactions of LZnI with 1 or 2 equiv of KC8 in the presence of bpy gave the radical complex LZn(bpy) (2) and [2.2.2-Cryptand-K][LZn(bpy)] (3), in which bpy either acts as a π-radical anion or a diamagnetic dianion, respectively. The paramagnetic nature of 2 was confirmed via solution magnetic susceptibility measurements, and UV-vis spectroscopy shows that 2 exhibits absorption bands typical for bpy radical species. The EPR spectra of 2 and its deuterated analog 2-d8 demonstrate that the spin density is localized to the bpy ligand. Density functional theoretical calculations and natural bond orbital analysis were employed to elucidate the electronic structure of complexes 1-3 and accurately reproduced the structural experimental data. It is shown that reduction of the bpy moiety results in a decrease in the β-diketiminate co-ligand bite angle and elongation of the Zn-N(β-diketiminate) bonds, which act cooperatively and in synergy with the bpy ligand by decreasing Zn-N(bpy) bond lengths to stabilize the energy of the LUMO. CA Cutsail und CA Schulz
- Published
- 2021
48. Biaryl Formation via Base-Promoted Direct Coupling Reactions of Arenes with Aryl Halides
- Author
-
Ruimao Hua, Hina Mehmood, Le Lu, and Muhammad Asif Iqbal
- Subjects
chemistry.chemical_classification ,Base (chemistry) ,Ligand ,General Chemical Engineering ,Aryl ,organic chemicals ,Halide ,General Chemistry ,Medicinal chemistry ,Article ,chemistry.chemical_compound ,Chemistry ,chemistry ,Nitro ,Direct coupling ,heterocyclic compounds ,QD1-999 - Abstract
In the absence of ligand, Cs2CO3-promoted cross-coupling reaction of arenes with cyano-/nitro-substituted aryl halides in DMSO affording biaryls is reported. The cyano/nitro group in biaryls is useful and convenient for further transformation. The formation of dibenzofurans resulting from the reactions between arenes and 1-bromo-2-iodobenzene is also reported. On the basis of control experiments and theoretical studies, a radical mechanism is proposed for the formation of biaryls.
- Published
- 2021
49. Simple, Axial Ligand-Mediated Route to Water-Soluble Iridium Corroles
- Author
-
Abhik Ghosh, Rune F. Einrem, Ivar Kristian Thomassen, and Daniel Rasmussen
- Subjects
Tris ,Ligand ,General Chemical Engineering ,chemistry.chemical_element ,General Chemistry ,Combinatorial chemistry ,Article ,Adduct ,chemistry.chemical_compound ,Chemistry ,chemistry ,TCEP ,Iridium ,Corrole ,TPPTS ,QD1-999 ,Phosphine - Abstract
The synthesis and purification of water-soluble porphyrin-type compounds for photodynamic therapy and other medical applications is often a tedious exercise. Here, we have investigated the simple stratagem of adding a water-soluble axial ligand to the standard protocol for iridium insertion into simple meso-triarylcorroles. Early results showed that six-coordinate Ir[TpXPC](dna)2 derivatives, in which TpXPC = tris(para-X-phenyl)corrole (X = CF3, CN, H, and OMe) and dna = dinicotinic acid, are highly water-soluble. In the end, however, all axially nitrogen-ligated complexes proved unstable with respect to chromatographic purification and storage. Five-coordinate water-soluble phosphine adducts, fortunately, proved a great improvement. From the point of view of ease of purification and storage, the best products proved to be Ir[TpXPC](L), where X = CF3 and OMe and L = tris(2-carboxyethyl)phosphine (tcep) and trisodium tris(3-sulfonatophenyl)phosphine (tppts); carefully optimized synthetic protocols are presented for these four compounds.
- Published
- 2021
50. Tuning Chromophore-Based LMOF Dimensionality to Enhance Detection Sensitivity for Fe3+ Ions
- Author
-
Jun-Feng Li, Li-Zhuang Chen, Xu Xiudian, Lei Zhou, Fang-Ming Wang, Jing Li, and Ever Velasco
- Subjects
Ligand ,General Chemical Engineering ,Stacking ,chemistry.chemical_element ,General Chemistry ,Manganese ,Chromophore ,Fluorescence ,Ion ,Crystallography ,Chemistry ,chemistry ,Titration ,Luminescence ,QD1-999 - Abstract
Herein, we report the synthesis of two new manganese-based luminescent metal-organic frameworks (LMOFs) [Mn0.5(tipe)(1,4-ndc)] n (1) and [Mn(tipe)(1,4-ndc) (H2O)·(DMF)2·(H2O)3] n (2) [tipe = 1,1,2,2-tetrakis(4-(1H-imidazol-1-yl)phenyl)ethene (tipe) and 1,4-ndc = 1,4-naphthalenedicarboxylic acid] constructed from an aggregation-induced emission (AIE) chromophore ligand. Compound 1 can undergo a facile single-crystal-to-single-crystal transformation to form compound 2, which results in an increase in dimensionality from a two-dimensional (2D) network to a three-dimensional (3D) network. Both compounds demonstrate excellent performance for the solution-phase detection of Fe3+ ions through a significant and rapid quench in luminescence emission. Fluorescence titration experiments reveal that compound 2 is more selective toward Fe3+ compared to compound 1 because of its 3D stacking mode. The Ksv value for compound 2 (32 378 M-1) is twice as large as that for compound 1 (15 854 M-1) for the detection of Fe3+ ions. We attribute this significant increase in performance to the increase in dimensionality. In addition, compound 2 demonstrates high selectivity and sensitivity for the detection of Cr3+ cations and Cr2O72- anions.
- Published
- 2021
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