15 results on '"Haoqing Zhang"'
Search Results
2. Development and application of a GIS-based artificial neural network system for water quality prediction: a case study at the Lake Champlain area
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Liu Wenquan, Haoqing Zhang, and Fang Lu
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Artificial neural network ,business.industry ,Computer science ,Oceanography ,computer.software_genre ,Resource (project management) ,Information system ,Total phosphorus ,Water quality ,Data mining ,business ,Spatial analysis ,Statistical graphics ,computer ,Water Science and Technology ,Graphical user interface - Abstract
Artificial Neural Network (ANN) models have been extensively applied in the prediction of water resource variables, and Geographical Information System (GIS) includes powerful functions to visualize spatial data. In order to provide an efficient tool for environmental assessment and management that combines the advantages of these two modules, a GIS-based ANN water quality prediction system was developed in the present study. The ANN module and ArcGIS Engine module, along with a dynamic database, were imbedded in the system, which integrates water quality prediction via the ANN model and spatial presentation of the model results. The structure of the ANN model could be modified through the graphical user interface to optimize the model performance. The developed system was applied to a real case study for the prediction of the total phosphorus concentration in the Lake Champlain area. The prediction results were verified with the monitoring data, and the performance of the developed model was further evaluated through graphical techniques and quantitative statistical methods. Overall, the developed system provided satisfactory prediction results, and spatial distribution maps of the predicted results were obtained, which coincided with the monitored values. The developed GIS-based ANN water quality prediction system could serve as an efficient tool for engineers and decision makers.
- Published
- 2019
3. Versatile digital polymerase chain reaction chip design, fabrication, and image processing
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Haoqing Zhang, Pavel Zahradník, Pavel Neuzil, Alzbeta Tureckova, Huanan Li, Ying Xu, and Honglong Chang
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Fabrication ,Computer science ,Microfluidics ,Image processing ,02 engineering and technology ,Integrated circuit design ,010402 general chemistry ,computer.software_genre ,01 natural sciences ,Image stitching ,Hardware_INTEGRATEDCIRCUITS ,Materials Chemistry ,Digital polymerase chain reaction ,Electrical and Electronic Engineering ,Instrumentation ,business.industry ,Page layout ,Metals and Alloys ,021001 nanoscience & nanotechnology ,Condensed Matter Physics ,Chip ,0104 chemical sciences ,Surfaces, Coatings and Films ,Electronic, Optical and Magnetic Materials ,0210 nano-technology ,business ,computer ,Computer hardware - Abstract
We present a family of digital polymerase chain reaction (dPCR) chips made of silicon that are (9 × 9) mm2 in size, have a unique layout design, and have between 26,448 and 1,656,000 reaction wells. The chip layout was split into six fields sized 4200 × 2785 μm2 that contain reaction wells with a gap of a few μm separating the fields from each other. We also developed a universal fluorescence imaging method capable of processing images from those chips. It comprised automatic image acquisition, image stitching, alignment mark registration, rotation correction, determination of reaction wells’ positions, and result processing. The chip design, with fully automated image processing, provided a fast and reliable system for the absolute quantitative analysis of dPCR. Combined with ease-of-use, this family of dPCR chips offers a pathway to enable fast and affordable digital microfluidic diagnostic applications.
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- 2019
4. Research on solvency measurement and prediction-based on the analysis of financial indicators of insurance companies
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Haoqing Zhang
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Finance ,Solvency ,Order (exchange) ,business.industry ,Capital (economics) ,Equity (finance) ,Business - Abstract
In this paper, we use the factor analysis model, and get the prediction function of the solvency of insurance companies. In order to verify the feasibility of the model, we have adopted Accumulated Local Effects Plot. It is proved that the solvency of an insurance company is positively correlated with its monetary funds, term deposits and owner's equity, negatively related to its own liabilities, and that the two indicators of monetary capital and insurance company liabilities are factors that have a high marginal contribution to predicting the solvency of insurance companies.
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- 2021
5. PCR past, present and future
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Marie Korabecna, Hanliang Zhu, Haoqing Zhang, Pavel Neužil, Soňa Laššáková, and Ying Xu
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2019-20 coronavirus outbreak ,Coronavirus disease 2019 (COVID-19) ,Computer science ,Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) ,Point-of-Care Systems ,Pneumonia, Viral ,microfluidics ,Computational biology ,Review ,01 natural sciences ,Polymerase Chain Reaction ,General Biochemistry, Genetics and Molecular Biology ,03 medical and health sciences ,Betacoronavirus ,COVID-19 Testing ,reverse transcription PCR ,Animals ,Humans ,Digital polymerase chain reaction ,Pandemics ,Biomedicine ,030304 developmental biology ,0303 health sciences ,business.industry ,Clinical Laboratory Techniques ,SARS-CoV-2 ,digital PCR ,RNA virus diagnoses ,010401 analytical chemistry ,COVID-19 ,Equipment Design ,Microfluidic Analytical Techniques ,0104 chemical sciences ,Reverse transcription polymerase chain reaction ,PCR ,portable systems ,Pcr method ,business ,Coronavirus Infections ,point-of-care diagnostics ,Biotechnology - Abstract
PCR has become one of the most valuable techniques currently used in bioscience, diagnostics and forensic science. Here we review the history of PCR development and the technologies that have evolved from the original PCR method. Currently, there are two main areas of PCR utilization in bioscience: high-throughput PCR systems and microfluidics-based PCR devices for point-of-care (POC) applications. We also discuss the commercialization of these techniques and conclude with a look into their modifications and use in innovative areas of biomedicine. For example, real-time reverse transcription PCR is the gold standard for SARS-CoV-2 diagnoses. It could also be used for POC applications, being a key component of the sample-to-answer system.
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- 2020
6. LAMP-on-a-chip: Revising microfluidic platforms for loop-mediated DNA amplification
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Haoqing Zhang, Pavel Neuzil, Ying Xu, Honglong Chang, Zdenka Fohlerova, and Ciprian Iliescu
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Computer science ,Paper-based LAMP ,Microfluidics ,Loop-mediated isothermal amplification ,Diagnostic system ,01 natural sciences ,Article ,Analytical Chemistry ,LAMP ,Spectroscopy ,Polymerase ,POC ,For loop ,biology ,business.industry ,010401 analytical chemistry ,Multi gene detection ,Chip ,Dna amplification ,Digital LAMP ,0104 chemical sciences ,PCR ,Microfluidic ,Single gene detection ,biology.protein ,Target gene ,business ,Computer hardware - Abstract
Nucleic acid amplification for the detection of infectious diseases, food pathogens, or assessment of genetic disorders require a laboratory setting with specialized equipment and technical expertise. Isothermal deoxyribonucleic acid amplification methods, such as loop-mediated isothermal amplification (LAMP), exhibit characteristics ideal for point-of-care (POC) applications, since their instrumentation is simpler in comparison with the standard method of polymerase chain reaction. Other key advantages of LAMP are robustness and the production of pyrophosphate in the presence of the target gene, enabling to detect the reaction products using the naked eye. Polymerase inhibitors, presented in clinical samples, do not affect the amplification process, making LAMP suitable for a simple sample-to-answer diagnostic systems with simplified sample preparation. In this review, we discuss the trends in miniaturized LAMP techniques, such as microfluidic, paper-based, and digital with their advantages and disadvantages, especially for POC applications alongside our opinion of the future development of miniaturized LAMP., Highlights • Introduction of loop mediated isothermal amplification (LAMP) and its principle. • Classical microfluidics-based LAMP for DNA/RNA detection. • Paper-based LAMP. • Microfluidic-based digital LAMP. • Future of microfluidic LAMP development.
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- 2020
7. <scp>nanolithography toolbox</scp>—Simplifying the design complexity of microfluidic chips
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Pavel Podesva, Imrich Gablech, Jan Pekárek, Huanan Li, Vojtěch Svatoš, Levent Yobas, Sheng Ni, Pavel Neužil, Hanliang Zhu, Xiaocheng Liu, Haoqing Zhang, and Jianguo Feng
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Computer science ,Microfluidics ,02 engineering and technology ,Integrated circuit ,01 natural sciences ,Soft lithography ,law.invention ,Software ,law ,0103 physical sciences ,Hardware_INTEGRATEDCIRCUITS ,Materials Chemistry ,Electrical and Electronic Engineering ,Instrumentation ,Microscale chemistry ,010302 applied physics ,business.industry ,Process Chemistry and Technology ,021001 nanoscience & nanotechnology ,Surfaces, Coatings and Films ,Electronic, Optical and Magnetic Materials ,Nanolithography ,0210 nano-technology ,Engineering design process ,business ,Computer hardware ,Microfabrication - Abstract
Microfluidic devices typically require complex shapes such as funnels, spirals, splitters, channels with different widths, or customized objects of arbitrary complexity with a smooth transition between these elements. Device layouts are generally designed by software developed for the design of integrated circuits or by general computer-aided design drawing tools. Both methods have their limitations, making these tasks time consuming. Here, a script-based, time-effective method to generate the layout of various microfluidic chips with complex geometries is presented. The present work uses the nanolithography toolbox (NT), a platform-independent software package, which employs parameterized fundamental blocks (cells) to create microscale and nanoscale structures. In order to demonstrate the functionality and efficiency of the NT, a few classical microfluidic devices were designed using the NT and then fabricated in glass/silicon using standard microfabrication techniques and in poly(dimethylsiloxane) using soft lithography as well as more complex techniques used for flow-through calorimetry. In addition, the functionality of a few of the fabricated devices was tested. The powerful method proposed allows the creation of microfluidic devices with complex layouts in an easy way, simplifying the design process and improving design efficiency. Thus, it holds great potential for broad applications in microfluidic device design.
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- 2020
8. Study of N ions implantation induced quantum well intermixing in GaInP/AlGaInP quantum well structures
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Tao Lin, Ruijuan Sun, Haoqing Zhang, Enmin Guo, Yupeng Duan, Xiaoyu Ma, and Nan Lin
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Materials science ,Photoluminescence ,Laser diode ,Annealing (metallurgy) ,business.industry ,Mechanical Engineering ,Metals and Alloys ,Laser ,law.invention ,Blueshift ,Ion ,X-ray photoelectron spectroscopy ,Mechanics of Materials ,law ,Materials Chemistry ,Optoelectronics ,business ,Quantum well - Abstract
N ions implantation induced quantum well intermixing in GaInP/AlGaInP triple quantum-well laser structures was firstly reported in this work. N ions were implanted with the energy of 40 keV and dose of 1e17 ions/cm2, and thereafter rapid thermal annealing process were performed at 750 °C from 40 s to 200 s to induce the intermixing. The photoluminescence wavelength blue-shifts were found increased with the increasing time and the largest blue-shift of 54.9 nm was obtained for 200 s annealing. Surface morphology results shows that the photoluminescence improvement in the annealing samples came from the restoration effect of the layer crystal and hetero-structure interfaces. X-ray photoelectron spectroscopy tests shows that the implanting N ions tend to form Ga–N bonding besides generating point defect to induce quantum well intermixing.
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- 2015
9. Next-generation sequencing improves molecular epidemiological characterization of thalassemia in Chenzhou Region, P.R. China
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Haiying Yan, Xiaoqin Yang, Zhenzhen Yin, Wei Li, Haoqing Zhang, Dongzhu Lei, Zhang Caifen, Danjing Chen, Shiping Chen, Jian Guo, Zhang Liming, Jianbiao Li, Fang Junbin, Xiaoyan Huang, Saijun Liu, Shuai Hou, Caiyun Li, and Jufang Tan
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0301 basic medicine ,Male ,thalassemia ,Thalassemia ,Hemoglobins, Abnormal ,Clinical Biochemistry ,Prevalence ,next‐generation sequencing ,Genetic analysis ,Polymerase Chain Reaction ,0302 clinical medicine ,hemic and lymphatic diseases ,Epidemiology ,Immunology and Allergy ,Child ,Research Articles ,Molecular Epidemiology ,Genetic Carrier Screening ,High-Throughput Nucleotide Sequencing ,Hematology ,P r china ,Middle Aged ,Medical Laboratory Technology ,030220 oncology & carcinogenesis ,Child, Preschool ,Female ,Inherited disease ,Research Article ,Microbiology (medical) ,Adult ,medicine.medical_specialty ,congenital, hereditary, and neonatal diseases and abnormalities ,China ,Adolescent ,prevalence ,DNA sequencing ,03 medical and health sciences ,Young Adult ,alpha-Thalassemia ,Internal medicine ,medicine ,Humans ,Molecular epidemiology ,business.industry ,Biochemistry (medical) ,beta-Thalassemia ,Public Health, Environmental and Occupational Health ,Infant ,medicine.disease ,030104 developmental biology ,variant ,Mutation ,business - Abstract
Objectives Thalassemia is a highly prevalent monogenic inherited disease in southern China. It is important to collect epidemiological data comprehensively for proper prevention and treatment. Methods In this study, blood samples collected from 15 807 residents of Chenzhou were primarily screened by hematological tests. A total of 3973 samples of suspected thalassemia carriers were further characterized by combined next‐generation sequencing (NGS) and Gap‐PCR. Results In total, 1704 subjects were diagnosed as thalassemia carriers with a total prevalence rate of 10.78%, including 943 α‐thalassemia carriers, 708 β‐thalassemia carriers, and 53 composite α and β‐thalassemia carriers. The prevalence rates of α‐thalassemia, β‐thalassemia, and composite α and β‐thalassemia were 5.97%, 4.48%, and 0.34%, respectively. Meanwhile, we characterized 19 α‐thalassemia variations and 21 β‐thalassemia variations in thalassemia carriers. Approximately 2.88% of thalassemia carriers would be missed by traditional genetic analysis. In addition, four novel thalassemia mutations and one novel abnormal hemoglobin mutation were identified. Conclusions Our data suggest a high prevalence of thalassemia and a diverse spectrum of thalassemia‐associated variations in Chenzhou. Also, combined NGS and Gap‐PCR is an effective thalassemia screening method. Our findings might be helpful for prevention and treatment of thalassemia in this region.
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- 2018
10. Red-shift in the InGaAsP/GaInP active region using impurity free vacancy diffusion induced quantum well intermixing
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Tao Lin, Nan Lin, Ruijuan Sun, Haoqing Zhang, Xiaoyu Ma, and Yupeng Duan
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Materials science ,Laser diode ,business.industry ,Annealing (metallurgy) ,Mechanical Engineering ,Metals and Alloys ,Sputter deposition ,law.invention ,X-ray photoelectron spectroscopy ,Mechanics of Materials ,law ,Impurity ,Vacancy defect ,Materials Chemistry ,Optoelectronics ,Wafer ,business ,Quantum well - Abstract
Red-shift in 808 nm Al-free InGaAsP/GaInP active region using impurity free vacancy diffusion (IFVD) induced quantum well intermixing (QWI) was firstly reported in this paper. The laser diode wafer had an active region of single 12 nm InGaAsP quantum well and two 20 nm GaInP barriers and then 200 nm SiO 2 dielectric film was deposited on the surface of the wafer by magnetron sputtering. The QWI processes were induced by rapid thermal annealing (RTA) at different times and temperatures, respectively. Red-shift instead of blue-shift in the InGaAsP/GaInP active region was found increased with the increasing annealing time and annealing temperature, and the largest red-shift of 7.3 nm was obtained in the sample annealed at 750 °C for 210 s. The results were analyzed theoretically and experimentally by Ga distribution simulation and X-ray photoelectron spectroscopy (XPS) to testify the theory of QWI.
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- 2015
11. Research on the high indium content InGaAs multiple quantum wells wafers for λ>1.55μm laser diodes
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Nan Lin, Hang Sun, Tao Lin, Yonggang Wang, Haoqing Zhang, and Xiaoyu Ma
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Photoluminescence ,Materials science ,Laser diode ,business.industry ,Mechanical Engineering ,Metals and Alloys ,Analytical chemistry ,chemistry.chemical_element ,Laser ,Volumetric flow rate ,law.invention ,Wavelength ,chemistry ,Mechanics of Materials ,law ,Materials Chemistry ,Optoelectronics ,Metalorganic vapour phase epitaxy ,business ,Indium ,Diode - Abstract
The effects of TMIn flow rate and AsH3 flow rate on the photoluminescence spectra of the high indium content InGaAs multiple quantum wells for lambda > 1.55 mu m laser diodes have been investigated both experimentally and theoretically. The wavelength peak red-shifted about 4.8 nm for increasing 1 sccm H-2 flow rate through TMIn under a AsH3 flow rate of 150 sccm, while the wavelength shift increases to 6.5 nm at a higher AsH3 flow rate of 300 sccm. Results show that more AsH3 flow rate will promote much TMGa pyrolysis than TMIn in the high indium content InGaAs growth. Considering the influence of growth parameters, the longest wavelength of 1.889 mu m among the InGaAs/InGaAsP strained MQWs samples was obtained with high crystal quality. (C) 2015 Elsevier B.V. All rights reserved.
- Published
- 2015
12. Impurity free vacancy diffusion induced quantum well intermixing based on hafnium dioxide films
- Author
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Hang Sun, Chen Yang, Nan Lin, Tao Lin, and Haoqing Zhang
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Materials science ,Annealing (metallurgy) ,business.industry ,Mechanical Engineering ,Condensed Matter Physics ,Blueshift ,chemistry.chemical_compound ,Full width at half maximum ,chemistry ,Mechanics of Materials ,Impurity ,Vacancy defect ,Optoelectronics ,General Materials Science ,Wafer ,business ,Hafnium dioxide ,Quantum well - Abstract
Impurity free vacancy diffusion (IFVD) induced quantum well intermixing (QWI) based on electron beam evaporation hafnium dioxide (HfO2) in the red light diode laser wafer is firstly demonstrated in this work. The red light diode laser wafer had an active region of two 6 nm-thick GaInP quantum wells and three 8 nm-thick AlGaInP quantum barriers. 135 nm thick HfO2 film was evaporated on the surface of the diode laser wafer at 200 °C. The QWI processes were induced by rapid thermal annealing (RTA) for 20 s at different temperatures. The intensity and the full width at half maximum (FWHM) of the active region emitting wavelength were found increasing and decreasing with the increasing annealing temperature, respectively. When the sample was annealed at 1000 °C, a blue shift of 18 nm was found by the HfO2 IFVD induced QWI. Moreover, the diffusion lengths and inter-diffusion coefficients were calculated based on concentration distribution in the active region, and the inter-diffusion coefficient values were higher than the results in the Zn impurity diffusion induced QWI.
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- 2015
13. Theoretical analysis of the inter-diffusion coefficients in the AlGaInP material quantum well intermixing
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R.G. Chen, Haoqing Zhang, Cheng Li, X.J. Ma, and Tao Lin
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Materials science ,Laser diode ,business.industry ,Band gap ,Mechanical Engineering ,Condensed Matter::Mesoscopic Systems and Quantum Hall Effect ,Condensed Matter Physics ,Epitaxy ,law.invention ,Distribution function ,Mechanics of Materials ,law ,Impurity ,Optoelectronics ,General Materials Science ,Wafer ,Diffusion (business) ,business ,Quantum well - Abstract
Quantum well intermixing (QWI) has been widely used in modifying the bandgap of semiconductor materials, post-growth; it has been investigated in fabricating non-absorbing mirror regions of laser cavities to improve output power. In this work, the QWI mechanism is briefly introduced. A concentration distribution function in multiple quantum wells is mathematically obtained for odd and even wells respectively. In addition, a 650 nm AlGaInP/GaInP quantum well wafer is fabricated by metal organic vapor phase epitaxy, and a series of quantum well intermixing experiments is accomplished by Zn impurity diffusions. Based on experimental data, a concentration distribution function is simulated and an inter-diffusion coefficient between Al and Ga is calculated. Finally, the effects of QWI on the inter-diffusion coefficient are discussed.
- Published
- 2013
14. Clinical and genomic evaluation of a Chinese patient with a novel deletion associated with Phelan-McDermid syndrome
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Dongzhu Lei, Jian Wang, Danjing Chen, Saijun Liu, Huan Huan peng, Jing Wu, Haoqing Zhang, Hui Huang, Shuai Hou, Huanming Yang, Shaoyuan Li, Zhiyu Peng, Haiying Yan, Xinxin Zhang, Santasree Banerjee, Caiyun Li, and Hanmei Li
- Subjects
0301 basic medicine ,Proband ,Male ,congenital, hereditary, and neonatal diseases and abnormalities ,China ,Phelan–McDermid syndrome ,Heredity ,Chromosomes, Human, Pair 22 ,translocation ,22q13 deletion syndrome ,Chromosomal translocation ,Chromosome Disorders ,030105 genetics & heredity ,novel deletion ,Short stature ,Translocation, Genetic ,03 medical and health sciences ,Neurodevelopmental disorder ,medicine ,Humans ,Genetic Predisposition to Disease ,Child ,SHANK3 ,Genetics ,business.industry ,Macrocephaly ,High-Throughput Nucleotide Sequencing ,medicine.disease ,Echocardiography, Doppler, Color ,Pedigree ,Research Paper: Chromosome ,030104 developmental biology ,Phenotype ,Oncology ,Karyotyping ,Speech delay ,Female ,medicine.symptom ,Chromosome Deletion ,business ,Tomography, X-Ray Computed ,Chromosome 22 ,Genome-Wide Association Study - Abstract
Phelan-McDermid syndrome is a neurodevelopmental disorder caused by the terminal deletion of chromosome 22 (22q13) followed by the loss of function of the SHANK3 gene. Various terminal deletions of chromosome 22q13 are associated with Phelan-McDermid with a spectrum of phenotypic severity. Here, we have done a clinical molecular study of a Chinese proband with Phelan-McDermid syndrome. Both the proband and her younger brother are associated with this syndrome while their parents are phenotypically normal. We used a karyotype in order to detect the genotype of the proband and her younger brother. We have also used whole genome low-coverage paired-end next generation sequencing to determine whether the parent is the carrier of translocation with terminal 22q13 deletions. We found that both proband and her younger brother are comprises of a novel deletion of 22q13.31q13.33, harboring genes were associated with several clinical phenotype such as severity of speech delay, neonatal hypotonia, delayed in age of walking, male genital anomalies, dysplastic toenails, large and fleshy hands, macrocephaly, short stature, facial asymmetry, and atypical reflexes. Probands and her younger brother inherited this translocation from their mother whereas their father is genotypically normal. In conclusion, our present study expands the deletion spectrum and report a novel deletion associated with Phelan-McDermid syndrome.
- Published
- 2016
15. Berberine inhibits cytosolic phospholipase A2 and protects against LPS-induced lung injury and lethality independent of the alpha2-adrenergic receptor in mice
- Author
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Hua-dong Wang, Yan-ping Wang, Yu-xia Yan, Da-xiang Lu, Haoqing Zhang, Ren-bin Qi, and Yong-mei Fu
- Subjects
Lipopolysaccharides ,Time Factors ,Berberine ,medicine.drug_class ,Neutrophils ,Phospholipases A2, Cytosolic ,Pulmonary Edema ,Pharmacology ,Lung injury ,Critical Care and Intensive Care Medicine ,Thromboxane A2 ,chemistry.chemical_compound ,Mice ,Phospholipase A2 ,Receptors, Adrenergic, alpha-2 ,Medicine ,Animals ,Phosphorylation ,Receptor ,Respiratory Distress Syndrome ,biology ,business.industry ,Tumor Necrosis Factor-alpha ,Yohimbine ,Lung Injury ,Pulmonary edema ,medicine.disease ,Receptor antagonist ,chemistry ,Immunology ,Emergency Medicine ,biology.protein ,business ,Bronchoalveolar Lavage Fluid ,medicine.drug - Abstract
Acute lung injury is still a significant clinical problem having a high mortality rate despite significant advances in antimicrobial therapy and supportive care made in the past few years. Our previous study demonstrated that berberine (Ber) remarkably decreased mortality and attenuated the lung injury in mice challenged with LPS, but the mechanism behind this remains unclear. Here, we report that pretreatment with Ber significantly reduced pulmonary edema, neutrophil infiltration, and histopathological alterations; inhibited protein expression and phosphorylation of cytosolic phospholipase A2; and decreased thromboxane A2 release induced by LPS. Yohimbine, an alpha2-adrenergic receptor antagonist, did not antagonize these actions of Ber. Furthermore, pretreatment with Ber decreased TNF-alpha production and mortality in mice challenged with LPS, which were enhanced by yohimbine, and Ber combined with yohimbine also improved survival rate in mice subjected to cecal ligation and puncture. Taken together, these observations indicate that Ber attenuates LPS-induced lung injury by inhibiting TNF-alpha production and cytosolic phospholipase A2 expression and activation in an alpha2-adrenoceptor-independent manner. Berberine combined with yohimbine might provide an effective therapeutic approach to acute lung injury during sepsis.
- Published
- 2008
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