Search

Your search keyword '"Farne, Anna"' showing total 14 results
Start Over Author "Farne, Anna"
14 results on '"Farne, Anna"'

1. Plant-based microarray data at the European Bioinformatics Institute. Introducing AtMIAMExpress, a submission tool for Arabidopsis Gene Expression Data to ArrayExpress

Author

Mukherjee, Gaurab, Abeygunawardena, Niran, Parkinson, Helen, Contrino, Sergio, Durinck, Steffen, Farne, Anna, Holloway, Ele, Lilja, Per, Moreau, Yves, Oezcimen, Ahmet, Rayner, Tim, Sharma, Anjan, Brazma, Alvis, Sarkans, Ugis, and Shojatalab, Mohammadreza

Subjects
Computational biology -- Research, Gene expression -- Research, DNA -- Research, Biological sciences, Science and technology
Published
2005

2. ArrayExpress update—trends in database growth and links to data analysis tools

Author

Rustici, Gabriella, Kolesnikov, Nikolay, Brandizi, Marco, Burdett, Tony, Dylag, Miroslaw, Emam, Ibrahim, Farne, Anna, Hastings, Emma, Ison, Jon, Keays, Maria, Kurbatova, Natalja, Malone, James, Mani, Roby, Mupo, Annalisa, Pereira, Rui Pedro, Pilicheva, Ekaterina, Rung, Johan, Sharma, Anjan, Tang, Amy Y., Ternent, Tobias, Tikhonov, Andrew, Welter, Danielle, Williams, Eleanor, Brazma, Alvis, Parkinson, Helen, and Sarkans, Ugis

Published
2013
Full Text
View/download PDF

3. Gene Expression Atlas update—a value-added database of microarray and sequencing-based functional genomics experiments

Author

Kapushesky, Misha, Adamusiak, Tomasz, Burdett, Tony, Culhane, Aedin, Farne, Anna, Filippov, Alexey, Holloway, Ele, Klebanov, Andrey, Kryvych, Nataliya, Kurbatova, Natalja, Kurnosov, Pavel, Malone, James, Melnichuk, Olga, Petryszak, Robert, Pultsin, Nikolay, Rustici, Gabriella, Tikhonov, Andrew, Travillian, Ravensara S., Williams, Eleanor, Zorin, Andrey, Parkinson, Helen, and Brazma, Alvis

Published
2012
Full Text
View/download PDF

4. ArrayExpress update—an archive of microarray and high-throughput sequencing-based functional genomics experiments

Author

Parkinson, Helen, Sarkans, Ugis, Kolesnikov, Nikolay, Abeygunawardena, Niran, Burdett, Tony, Dylag, Miroslaw, Emam, Ibrahim, Farne, Anna, Hastings, Emma, Holloway, Ele, Kurbatova, Natalja, Lukk, Margus, Malone, James, Mani, Roby, Pilicheva, Ekaterina, Rustici, Gabriella, Sharma, Anjan, Williams, Eleanor, Adamusiak, Tomasz, Brandizi, Marco, Sklyar, Nataliya, and Brazma, Alvis

Published
2011
Full Text
View/download PDF

6. ArrayExpress update—from an archive of functional genomics experiments to the atlas of gene expression

Author

Parkinson, Helen, Kapushesky, Misha, Kolesnikov, Nikolay, Rustici, Gabriella, Shojatalab, Mohammad, Abeygunawardena, Niran, Berube, Hugo, Dylag, Miroslaw, Emam, Ibrahim, Farne, Anna, Holloway, Ele, Lukk, Margus, Malone, James, Mani, Roby, Pilicheva, Ekaterina, Rayner, Tim F., Rezwan, Faisal, Sharma, Anjan, Williams, Eleanor, Bradley, Xiangqun Zheng, Adamusiak, Tomasz, Brandizi, Marco, Burdett, Tony, Coulson, Richard, Krestyaninova, Maria, Kurnosov, Pavel, Maguire, Eamonn, Neogi, Sudeshna Guha, Rocca-Serra, Philippe, Sansone, Susanna-Assunta, Sklyar, Nataliya, Zhao, Mengyao, Sarkans, Ugis, and Brazma, Alvis

Published
2009

8. A simple spreadsheet-based, MIAME-supportive format for microarray data: MAGE-TAB

Author

White Joseph, Stoeckert Christian J, Sherlock Gavin, Quackenbush John, Petersen Kjell, Miller Michael, Maier Donald S, Liu Junmin, Irizarry Rafael A, Holloway Ele, Farne Anna, Causton Helen C, Spellman Paul T, Rocca-Serra Philippe, Rayner Tim F, Whetzel Patricia L, Wymore Farrell, Parkinson Helen, Sarkans Ugis, Ball Catherine A, and Brazma Alvis

Subjects
Computer applications to medicine. Medical informatics, R858-859.7, Biology (General), QH301-705.5
Abstract

Abstract Background Sharing of microarray data within the research community has been greatly facilitated by the development of the disclosure and communication standards MIAME and MAGE-ML by the MGED Society. However, the complexity of the MAGE-ML format has made its use impractical for laboratories lacking dedicated bioinformatics support. Results We propose a simple tab-delimited, spreadsheet-based format, MAGE-TAB, which will become a part of the MAGE microarray data standard and can be used for annotating and communicating microarray data in a MIAME compliant fashion. Conclusion MAGE-TAB will enable laboratories without bioinformatics experience or support to manage, exchange and submit well-annotated microarray data in a standard format using a spreadsheet. The MAGE-TAB format is self-contained, and does not require an understanding of MAGE-ML or XML.

Published
2006
Full Text
View/download PDF

11. ArrayExpress update—trends in database growth and links to data analysis tools

Author

Rustici, Gabriella, primary, Kolesnikov, Nikolay, additional, Brandizi, Marco, additional, Burdett, Tony, additional, Dylag, Miroslaw, additional, Emam, Ibrahim, additional, Farne, Anna, additional, Hastings, Emma, additional, Ison, Jon, additional, Keays, Maria, additional, Kurbatova, Natalja, additional, Malone, James, additional, Mani, Roby, additional, Mupo, Annalisa, additional, Pedro Pereira, Rui, additional, Pilicheva, Ekaterina, additional, Rung, Johan, additional, Sharma, Anjan, additional, Tang, Y. Amy, additional, Ternent, Tobias, additional, Tikhonov, Andrew, additional, Welter, Danielle, additional, Williams, Eleanor, additional, Brazma, Alvis, additional, Parkinson, Helen, additional, and Sarkans, Ugis, additional

Published
2012
Full Text
View/download PDF

13. A simple spreadsheet-based, MIAME-supportive format for microarray data: MAGE-TAB

Author

Rayner, Tim F, primary, Rocca-Serra, Philippe, additional, Spellman, Paul T, additional, Causton, Helen C, additional, Farne, Anna, additional, Holloway, Ele, additional, Irizarry, Rafael A, additional, Liu, Junmin, additional, Maier, Donald S, additional, Miller, Michael, additional, Petersen, Kjell, additional, Quackenbush, John, additional, Sherlock, Gavin, additional, Stoeckert, Christian J, additional, White, Joseph, additional, Whetzel, Patricia L, additional, Wymore, Farrell, additional, Parkinson, Helen, additional, Sarkans, Ugis, additional, Ball, Catherine A, additional, and Brazma, Alvis, additional

Published
2006
Full Text
View/download PDF

14. Functional and Molecular Consequences of the Dnmt3aR882HMutation in Acute Myeloid Leukaemia

Author

Gozdecka, Malgorzata, Mazan, Milena M., Iyer, Vivek, Farne, Anna, Meduri, Eshwar, Bautista, Ruben, Walker, Nicolas, Ferguson-Smith, Anne C, Vassiliou, George S., and Huntly, Brian J.P

Abstract

The de novo DNA Methyltransferase 3A (DNMT3A) gene is one of the most commonly mutated gene in acute myeloid leukaemia with a normal karyotype (AML-NK). Approximately two thirds of mutations are heterozygous and affect codon R882, located within the methytransferase domain. Also, we and others have shown that these mutations occur in a significant proportion of haematologically normal people and behave as leukaemia-initiating changes.

Published
2015
Full Text
View/download PDF

Catalog

Books, media, physical & digital resources
See catalog results