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Bio‐optical properties of marine phytoplankton retrieved through satellite remote sensing are used to estimate ocean productivity and carbon cycling. Daily activity of phytoplankton is attuned to the predictable light fluctuations of the diel cycle. Field and laboratory studies have documented diel changes in phytoplankton growth, division, and respiration, carbon and pigment content, cell size, photosynthetic efficiency and rate, and DNA replication and transcription. Many of these physiological changes can alter cellular optical properties and contribute to diel variations in bulk absorption and scattering properties. Consequently, understanding phytoplankton contributions to diel optical cycles is essential for improving algorithms that convert remote sensing data to biological rates and stocks. Here, we describe time‐resolved cellular, photophysiological, and bio‐optical properties for three cultured phytoplankton ranging in cell size from ~ 1 to 6 μm: Ostreococcus lucimarinus, Synechococcus (WH8102), and Thalassiosira pseudonana, all of which can significantly contribute to phytoplankton abundance and/or biomass in the open and coastal ocean. This work is the first to characterize complete diel cycles in absorption and attenuation for O. lucimarinus and backscattering for all these species. Results show that the percent increase from the minimum to maximum values over the diel cycle ranged between ~ 24–121%, ~ 31–235%, and ~ 25–198% for particulate absorption, attenuation, and backscattering, respectively. Diel changes in bio‐optical properties also differed in both timing and magnitude across phytoplankton species, demonstrating the importance of contextualizing remote sensing observations with phytoplankton community composition. [ABSTRACT FROM AUTHOR]

Diatoms are the most recent major algal lineage added to the geological record, appearing more than 200 million years ago. They are stramenopile protists resulting from a secondary endosymbiotic event that yielded the only photosynthetic protistan lineage expressing external siliceous cell wall structures called frustules. Many diatoms also have large internal vacuoles, and a common assumption in the literature is that success of the diatoms is largely attributable to these two morphological inventions: the frustule for defense and vacuole for luxury nutrient uptake. Here, we revisit the evolution of these inventions, propose sequential steps in frustule development, replace luxury nutrient uptake with predator defense and buoyancy control as the driver of vacuole expansion, and suggest that perhaps the greatest significance of the frustule for diatom evolution is the secondary consequence of enhancing sexual reproduction. In this synthesis, we emphasize a distinction between the "general" success of diatoms and the success of "bloom‐forming" species, as the physiological and morphological drivers of these successes differ. Importantly, the bloom‐forming species are responsible for the major role of diatoms in aquatic biogeochemical cycles. The bloom‐forming habit we ascribe to specific physiological attributes that, at their core, revolve around influencing the balance between diatom growth and losses to predators. We propose that these physiological adaptations are linked to size‐dependent maximum division rates in bloom‐forming diatoms, because of size scaling of predator–prey interactions. The existence of these bloom‐forming species yields an apparent allometric relationship that has previously been interpreted in terms of nutrient acquisition. Our analysis yields insights into species successions during blooms, considers the fundamental benefit of blooming (and subsequent sinking) from a reproductive standpoint, and provides some reinterpretation of diatoms success over geologic time and in the modern ocean. [ABSTRACT FROM AUTHOR]

Volatile organic compounds (VOCs) comprise a vast pool of low molecular weight and rapidly diffusible chemicals that are emitted from all cells as well as by photolysis of dissolved organic matter and burning of fossil fuels. In the ocean, VOCs are an important component of the marine carbon cycle, serving as plankton growth products and substrates and also as info-chemicals that influence phytoplankton life cycles. When VOCs are emitted from the ocean into the atmosphere, they alter Earth's radiative budget through oxidation reactions and secondary aerosol formation. Marine phytoplankton are the primary biotic source of marine VOCs, many of which are exploited as nutrient resources by ubiquitous bacterioplankton that have evolved specific mechanisms to consume these compounds. Thus, the balance of VOC production and consumption exerts control on the concentrations of dissolved VOCs at the sea-air interface. Current simulations of atmospheric chemistry do not take into account biological controls of dissolved VOCs. Linkages between phytoplankton communities, VOC composition, and surface ocean properties are promising avenues for improving the next generation of chemical transport models that quantify and predict VOC emissions. We suggest that VOC accumulation may be predictable by identifying periods when plankton communities are disrupted by biological or physical processes. Layered models that use remote sensing and ocean physics to measure the states and trajectories of plankton assemblages have promise for predicting ocean sea-air VOC transfer. [ABSTRACT FROM AUTHOR]

Acetaldehyde, methanol, acetone, and isoprene are important reactive volatile organic compounds (VOCs) in the oceans that partition to the atmosphere in significant amounts. Reports of potentially high rates of VOC turnover in the North Atlantic suggested that both biotic and abiotic processes are involved. The biological basis for VOC cycling by ocean plankton is unknown, but is potentially important because of VOC contributions to carbon cycle budgets and atmospheric chemistry. We designed dynamic stripping chambers that coupled to a proton transfer reaction mass spectrometer to measure VOC production and consumption by cultured phytoplankton and bacterioplankton. The diatom, Thalassiosira pseudonana, produced acetaldehyde in a light-dependent manner. Acetaldehyde was oxidized by the chemoheterotrophic bacterium, Pelagibacter, at rates that suggest that most acetaldehyde is recycled in the ocean before escaping to the atmosphere. These results show that field observations of acetaldehyde turnover reported previously could be explained by biological activity. Rates of production by phytoplankton cultures of methanol, acetone, and isoprene were also measured. These findings support the conclusion that VOCs are a conduit for carbon transfer directly from phytoplankton to bacterioplankton, with the remainder available for escape to the atmosphere. [ABSTRACT FROM AUTHOR]

Lymphangiosarcomas are uncommon vascular neoplasms that arise from lymphatic endothelial cells (LECs). They efface and replace normal subcutaneous tissue and are characterised by arborising, vascular channels lined by a single layer of pleomorphic endothelial cells and a paucity of erythrocytes. Lymphangiosarcomas are architecturally similar to hemangiosarcomas, a common malignancy of vascular origin arising from blood vascular endothelial cells. Common immunohistochemical markers for vascular endothelium, such as Factor VIII-related antigen (F8RA) and CD31, have traditionally been used to confirm the diagnosis of tumours of vascular origin. However, these markers fail to differentiate between lymphangiosarcoma and hemangiosarcoma, which often show overlapping morphologic features, disparate clinical behaviour and require different treatment modalities. Here we describe the use of two novel LEC-specific markers, lymphatic vessel endothelial receptor-1 ( LYVE-1) and prospero-related homeobox gene-1 ( PROX-1), to further differentiate between vascular tumours of lymphatic (lymphangiosarcoma) and blood (hemangiosarcoma) endothelial cell origin in the dog. [ABSTRACT FROM AUTHOR]

Lymphangiosarcoma ( LAS) is an uncommon malignant neoplasia arising from lymphatic endothelium; little information exists regarding therapy. Single institutional retrospective review for canine LAS histopathology diagnoses over a 15-year period yielded 12 dogs. Ten dogs were presented for a mass and/or swelling at cervical, trunk or limb regions. Prior to diagnosis, 10 dogs received empiric wound therapy. Cytology performed in 10 consisted of mild inflammation. Survival ranged from 60, 168 and 876 days for three dogs with palliation; 90 days with prednisone in one; 182 days with chemotherapy in one; 240, 267, 487, 630 and 941 days for five receiving surgery; and 574 days for one receiving surgery, radiation and chemotherapy. One dog is alive with recurrence at 243 days following surgery and carboplatin chemotherapy. Clinical improvement existed in LAS dogs receiving multimodal therapies. Early tissue biopsies are recommended for progressive oedematous lesions of unknown origin. [ABSTRACT FROM AUTHOR]

The 14C-uptake method is the most common approach employed for estimating primary production in the ocean. Normalizing 14C-uptake to chlorophyll a and time yields a value termed the assimilation number, which is thought to reflect phytoplankton physiology. It is often assumed that the measured rate of 14C-uptake is between net and gross primary production, depending on the time scale of the incubation. Recent studies employing multiple oxygen and carbon isotopic methods to measure photosynthesis of phytoplankton grown over a range of steady-state division rates have provided mechanistic insights on the relationship between 14C-uptake and gross-to-net primary production. Results from these studies show that short-term (<12 h) "photosynthesis-irradiance" measurements are not a reliable means of estimating net production, gross production or nutrient limitation, but can provide important information on the photoacclimation state of the phytoplankton. Long-term (24 h) incubations yield assimilation numbers that are in good agreement with net production rates, but are independent of nutrient-limited division rates. Despite complications in interpreting 14C-uptake data, we suggest that these measurements are important for understanding phytoplankton physiology and carbon cycles while, at the same time, efforts are needed to establish new incubation-free methods for measuring phytoplankton division rate and biomass. [ABSTRACT FROM AUTHOR]

Background Mast cell tumors (MCTs) are the most common skin tumors in dogs and exhibit variable biologic behavior. Mutations in the c-kit proto-oncogene are associated with the tumorigenesis of MCTs, resulting in growth factor-independent and constitutive phosphorylation of the KIT receptor tyrosine kinase (RTK). Toceranib (TOC) phosphate (Palladia®) is a KIT RTK inhibitor that has biological activity against MCTs. Despite these benefits, patients ultimately develop resistance to TOC. Therefore, there is a need to identify distinguishing clinical and molecular features of resistance in this population. Results The canine C2 mastocytoma cell line contains an activating mutation in c-kit. Three TOCresistant C2 sublines (TR1, TR2, TR3) were established over seven months by growing cells in increasing concentrations of TOC. TOC inhibited KIT phosphorylation and cell proliferation in a dose-dependent manner in the treatment-naïve, parental C2 line (IC50 < 10 nM). In contrast, the three sublines were resistant to growth inhibition by TOC (IC50 > 1,000 nM) and phosphorylation of the KIT receptor was less inhibited compared to the TOCsensitive C2 cells. Interestingly, sensitivity to three structurally distinct KIT RTK inhibitors was variable among the sublines, and all 3 sublines retained sensitivity to the cytotoxic agents vinblastine and lomustine. Sequencing of c-kit revealed secondary mutations in the juxtamembrane and tyrosine kinase domains of the resistant sublines. These included point mutations in TR1 (Q574R, M835T), TR2 (K724R), and TR3 (K580R, R584G, A620S). Additionally, chronic TOC exposure resulted in c-kit mRNA and KIT protein overexpression in the TOC-resistant sublines compared to the parental line. C2, TR1, TR2, and TR3 cells demonstrated minimal P-glycoprotein (P-gp) activity and no functional P-gp. Conclusions This study demonstrates the development of an in vitro model of acquired resistance to targeted therapy in canine MCTs harboring a c-kit-activating mutation. This model may be used to investigate the molecular basis of and strategies to overcome TOC resistance. [ABSTRACT FROM AUTHOR]

We compare the nutrient-dependent photosynthetic efficiencies of the chlorophyte, Dunaliella tertiolecta, with those of the marine diatom, Thalassiosira weissflogii. Despite considerable evolutionary and physiological differences, these two species appear to use nearly identical growth strategies under a wide range of nutrient limitation., Using a variety of physiological measurements, we find that, for both species and across all growth rates, 75% of the gross photosynthetic electron flow is invested in carbon fixation and only 30% is retained as net carbon accumulation. A majority of gross photosynthesis (70%) is ultimately used as reductant for biosynthetic pathways and for the generation of ATP., In both species, newly formed carbon products exhibit much shorter half-lives at slow growth rates than at fast growth rates. We show that this growth rate dependence is a result of increased polysaccharide storage during the S phase of the cell cycle., We present a model of carbon utilization that incorporates this growth rate-dependent carbon allocation and accurately captures ( r2 = 0.94) the observed time-resolved carbon retention. Together, our findings suggest a common photosynthetic optimization strategy in evolutionarily distinct phytoplankton species and contribute towards a systems-level understanding of carbon flow in photoautotrophs. [ABSTRACT FROM AUTHOR]

Summary The 1.3 Mbp genome of HTCC2181, a member of the abundant OM43 clade of coastal bacterioplankton, suggested it is an obligate methylotroph. Preliminary experiments demonstrated that methanol and formaldehyde, but not other common C1 compounds such as methylamine, could support growth. Methanol concentrations in seawater are reportedly < 100 nM, suggesting either that the flux of methanol through plankton pools is very rapid, or that methanol may not be the primary growth substrate for HTCC2181. Therefore, we investigated the apparent extreme substrate range restriction of HTCC2181 in greater detail. Growth rate and maximum cell density of HTCC2181 increased with methanol concentration, yielding a Ks value of 19 µM. In contrast, no growth was observed in the presence of the methylated (C1) compounds, methyl chloride, trimethylamine-oxide (TMAO) or dimethylsulfoniopropionate (DMSP) when they were the sole substrates. However, growth rate, maximum cell density and cellular ATP content were significantly enhanced when any of these methylated compounds were provided in the presence of a limiting concentration of methanol. These observations fit a model in which the metabolic intermediate formaldehyde is required for net carbon assimilation, allowing C1 substrates that do not produce a formaldehyde intermediate to be oxidized for energy, but not assimilated into biomass. Rates of methanol and TMAO oxidation and assimilation were measured with 14C-radiolabelled compounds in cultures of HTCC2181 and seawater microbial communities collected off the Oregon coast. The results indicated that in nature as well as in culture, C1 substrates are partitioned between those that are mainly oxidized to produce energy and those that are assimilated. These findings indicate that the combined fluxes of C1 compounds in coastal systems are sufficient to support significant populations of obligate methyltrophs by a metabolic strategy that involves the synergistic metabolism of multiple C1 compounds. [ABSTRACT FROM AUTHOR]

The long-term effect of feeding the catecholamine analog ractopamine (RAG; ractopamine hydrochloride, Elanco Animal Health, Indianapolis, IN) on the expression of genes involved in energy and lipid metabolism in subcutaneous adipose tissue was studied. Large White pigs (84 kg) were fed corn- and soy- bean meal-based diets supplemented with 0, 20, or 60 mg/kg of RAG for 14, 28, or 42 d. Expression (mRNA abundance) in adipose tissue of sterol regulatory binding protein-1 (SREBP-1), PPARα, PPAR-γ2, fatty acid synthase (FAS), glucose transporter 4 (GLUT4), and stearoyl-CoA desaturase was determined by Northern blotting. Feed intakes did not differ, and RAG (20 and 60 mg/kg) improved BW gain at d 14, 28, and 42 (P < 0.05) and increased loin eye area (measured on d 42 only; P < 0.05). Expression of SREBP-1 and PPARγ2 declined (P < 0.05) with RAG by d 28 and 42, whereas expression of PPARα was increased (P < 0.05) on d 14, 28, and 42. After 14 d, expression of FAS and GLUT4 was decreased (P < 0.05) with 60 mg/kg of RAC, whereas both RAC concentrations attenuated FAS expression on d 28 and 42. Overall, adipose tissue stearoyl-CoA desaturase expression was not affected by RAC but showed somewhat less expression (P < 0.15) on d 28 at 60 mg/kg of RAC. Although prolonged chronic RAG feeding most likely downregulates adipose tissue membrane β-adrenergic receptors, mRNA abundances of anabolic lipid metabolism transcription factors, glucose transporters, and enzymes (SREB:P-1 PPARγ2, FAS, GLUT4) were still attenuated up to d 42. Conversely, a transcription factor related to oxidative metabolism expression (PPARα) was enhanced. We conclude that even after 42 ci, RAC still decreased expression of lipogenic genes in adipose tissue by yet undefined cyclic adenosine monophosphate-directed mechanisms, but in contemporary lean pigs, this effect is likely of limited practical significance. [ABSTRACT FROM AUTHOR]

The chl-specific short-term C-based production ( P) measurement is a widely used tool to understand phytoplankton responses to environmental stresses. However, among the metabolic consequences of these stresses is variability in lifetimes of newly fixed carbon that cause P to range between chl-specific net primary production ( NPP *) and chl-specific gross photosynthetic electron flow that is available for carbon reduction () depending on growth rate. To investigate the basis for this discrepancy, photosynthate utilization was characterized in Dunaliella tertiolecta Butcher grown at three different growth rates in N-limited chemostats. P was measured throughout a 2 min to 24 h time course and showed clear growth-rate-dependent differences in lifetimes of newly fixed carbon. C pulse-chase experiments revealed differences in patterns of carbon utilization between growth rates. At high growth rate, the majority of C was initially fixed into polysaccharide and lipid, but the relative contribution of each labeled biochemical pool to the total label changed over 24 h. In fast-growing cells, labeled polysaccharides decreased 50%, while labeled lipids increased over the first 4 h. At low growth rate, C was initially incorporated primarily into protein, but the contribution of labeled protein to the total label increased over the next 24 h. Together, time-resolved measurements of P and cellular NAD and NADP content suggest an enhanced role for alternative dissipation pathways at very low growth rate. Findings of this study contribute to an integrated understanding of growth-rate-dependent shifts in metabolic processes from photosynthesis to net growth. [ABSTRACT FROM AUTHOR]

This case series presents a unique and unreported variant of feline intestinal mast cell tumour recognized at the CSU Veterinary Diagnostic Laboratory. Fifty cases of feline intestinal mast cell tumours described as having a significant stromal component were reviewed. Neoplastic cells formed a trabecular pattern admixed with moderate to abundant dense stromal collagen (sclerosis). Neoplastic cells had poorly discernible intracytoplasmic granules which demonstrated metachromasia with special histochemical stains consistent with mast cell granules. Additionally, a subset of cases stained for mast cell-specific tryptase and c-kit demonstrated positive immunoreactivity. Eosinophilic infiltrates were moderate to marked in almost all cases. Lymph node and hepatic metastases were present in 66% of the cases. Treatment and clinical outcome was available in 25/50 cases. Twenty-three of these patients died or were euthanized within 2 months of initial diagnosis. This is the first case series to characterize a sclerosing variant of intestinal mast cell tumour in the cat which appears to have a high propensity for metastasis and a guarded prognosis. [ABSTRACT FROM AUTHOR]

Has Harry Judge's career reproduced in a lifetime the centuries-old history of Brasenose College and the University of Oxford? His biography and the history of his college in relation to Christian belief and modern university reform are briefly recapitulated. All tell a story of adaptation and modernisation, the man short, the college long, the university in ceaseless change from a clerical foundation through an association of colleges as finishing schools for the Establishment to a collegiate university aspiring to place itself in the 'world league' of research centres. [ABSTRACT FROM AUTHOR]

The article discusses the biochemical and physiological implications of butane monooxygenase activity in pseudomonas butanovora. Bacterial monooxygenase enzymes are broadly studied for its potential to help degrade environmental pollutants. It also serves as a biocatalysts for the creation of important chemicals for industrial purposes. Pseudomonas Butanovora cultivates with butane through the oxidation of butane to 1- butanol. This is done through a soluble butane monooxygenase. A supposed model is presented that tries to explain propionate- dependent inactivation with the butane monooxygenase when applied to the soluble methane monooxygenase.

The physiological consequences of trichloroethylene (TCE) transformation by three butane oxidizers were examined. Pseudomonas butanovora, Mycobacterium vaccae, and Nocardioides sp. CF8 utilize distinctly different butane monooxygenases (BMOs) to initiate degradation of the recalcitrant TCE molecule. Although the primary toxic event resulting from TCE cometabolism by these three strains was loss of BMO activity, species differences were observed. P. butanovora and Nocardioides sp. CF8 maintained only 4% residual BMO activity following exposure to 165 μM TCE for 90 min and 180 min, respectively. In contrast, M. vaccae maintained 34% residual activity even after exposure to 165 μM TCE for 300 min. Culture viability was reduced 83% in P. butanovora, but was unaffected in the other two species. Transformation of 530 nmol of TCE by P. butanovora (1.0 mg total protein) did not affect the viability of BMO-deficient P. butanovora cells, whereas transformation of 482 nmol of TCE by toluene-grown Burkholderia cepacia G4 caused 87% of BMO-deficient P. butanovora cells to lose viability. Together, these results contrast with those previously reported for other bacteria carrying out TCE cometabolism and demonstrate the range of cellular toxicities associated with TCE cometabolism. [ABSTRACT FROM AUTHOR]

This article focuses on the life and works of Thomas Humphrey Marshall, president of the British Sociological Association during 1964-1969. Marshall was born in 1893. His life and work extended virtually over the whole period of the development of sociology as an organised academic discipline in Great Britain. He began his career as a Cambridge historian, translated to the London School of Economics in 1925, emerged formally as a sociologist in 1929, and alternated thereafter between academic and public service. Marshall has formed an understanding of post-feudal or post-estate society, especially in England, and most especially from the point of view of the legal basis of the institutions of class and status which interacted to produce equalities and inequalities. He absorbed the essentials of English economic history. He stood as a Labour candidate for a safe Conservative constituency in Surrey at the General Election of 1922. He was beaten and returned to Cambridge knowing that he was not suited to a career as a politician. By his tolerant appreciation of phenomenology, exchange theory, structuralism and all the fashionable enthusiasms of the 1960s and 1970s Marshall demonstrated a model of personal professionalism. He died in 1981.

The article focuses on issues regarding sociology of education in the U.S. According to the author, radical education historians tend to focus on conflicts over the structure of the educational system. On the other hand, Max Weber suggested that a critical element of the power of dominant groups resides in their capacity to impose educational and cultural ideals on school. Furthermore, the absence in conflict theory of an analysis of educational system has proved damaging to the emergence of a radical theory of educational politics.

The article aims to understand the meaning of the inaugural address, The Application of Social Research, given by sociologist David Glass in order to reassert the potential of sociology as political arithmetic, to comment on progress or the lack of it, since he died in 1978, and to illustrate from the example of British higher education just as Glass did for urban planning at that time. The contemporary search for improved accountability derives more or less from the world of innocence in which, after World War II, Glass gave his inaugural address and the Welfare State was born. It was a world of common consensual goals. By general consent, a world fit for heroes and cripples was to be created, giving civilized substance to peace and justifying the sacrifices of war. Guaranteed public provision of health, education, and welfare were agreed as aims, and the means were thought possible. In Britain this meant a benign state, an uncorrupt bureaucracy and public-spirited professions. Government enjoyed remarkable credence. Political democracy rested on enthusiastic support, and belief was widespread that the will of the majority could be translated faithfully through the chain of democracy from the electorate through Parliament to the executive, and finally, to action.

This articles provides an overview of the topics on British sociology discussed in the September 1989 issue of The British Journal of Sociology. Pahl and Westergaard's reports to the University Grants Council on the institutional state of sociology in the British universities, represents a sociography of the sociological establishment at the last moment of a constitution of more or less autonomous universities which is not to pass to national management by the Universities' Funding Council. While Albrow's view of the nature of sociology offers illuminating contrast with the view taken by W. G. Runciman. Runciman dismissed some other fashionable explanations and went on to put forward his own terms of the nature of the subject. The significance of education in the political economy of modern society differs sharply in liberal and Marxist theory. For liberal it is central to the determination of both production and distribution. For Marxists it is a dependent variable about which Marx himself wrote little. In more recent writing the contrast continues, mainly because of opposed interpretations of the changes in the structure of employment and the incidence of the changes in the structure of employment and the incidence of social mobility both of which entail theories of the relation between education and employment.

Attitudes towards the power and status of the professorship are analysed among a national sample of university teachers in Britain. Discontent with both power (`professorial oligarchy') and status (the career expectation of a chair) are widespread and closely correlated. But political attitudes are more closely aligned to attitudes towards professorial power than towards professorial status. Cosmopolitanism as opposed to Iocalism is correlated with critical attitudes towards professorial power and status. Together these attitudes suggest distinct social-academic philosophies which are linked to the social and political structure of society as well as to the changing structure of higher education. [ABSTRACT FROM AUTHOR]

Episodic deep mixing events are one component of the biological carbon pump that physically transports organic carbon into the mesopelagic. Episodic deep mixing also disrupts summertime thermal stratification thereby changing the light field and nutrient concentrations available for phytoplankton growth. Phytoplankton survival and growth below the mixed layer following restratification depends on how rapidly cells can employ a variety of photoacclimation processes in response to the environmental changes. To compare the relative timescales of summertime episodic deep mixing events with the timescales of phytoplankton photoacclimation processes, we first analyzed autonomous float data to survey the frequency and magnitude of deep mixing events in the western North Atlantic Ocean. Next, we simulated a sustained deep mixing event in the laboratory and measured rates of acclimation processes ranging from light harvesting to growth in a model diatom and green alga. In both algae increases in chlorophyll (Chl) were coupled to growth, but growth of the green alga lagged the diatom by about a day. In float profiles, significant increases in Chl and phytoplankton carbon (Cphyto) were detected below the mixed layer following episodic deep mixing events. These events pose a previously unrecognized source of new production below the mixed layer that can significantly boost the amount of carbon available for export to the deep ocean. [ABSTRACT FROM AUTHOR]

A letter to the editor about idiopathic intracranial hypertension with papilledema is presented.

Viral lysis of phytoplankton is one of the most common forms of death on Earth. Building on an assay used extensively to assess rates of phytoplankton loss to predation by grazers, lysis rates are increasingly quantified through dilution-based techniques. In this approach, dilution of viruses and hosts are expected to reduce infection rates and thus increase host net growth rates (i.e., accumulation rates). The difference between diluted and undiluted host growth rates is interpreted as a measurable proxy for the rate of viral lytic death. These assays are usually conducted in volumes ≥ 1 L. To increase throughput, we implemented a miniaturized, high-throughput, high-replication, flow cytometric microplate dilution assay to measure viral lysis in environmental samples sourced from a suburban pond and the North Atlantic Ocean. The most notable outcome we observed was a decline in phytoplankton densities that was exacerbated by dilution, instead of the increased growth rates expected from lowered virus-phytoplankton encounters. We sought to explain this counterintuitive outcome using theoretical, environmental, and experimental analyses. Our study shows that, while die-offs could be partly explained by a 'plate effect' due to small incubation volumes and cells adhering to walls, the declines in phytoplankton densities are not volume-dependent. Rather, they are driven by many density- and physiology-dependent effects of dilution on predation pressure, nutrient limitation, and growth, all of which violate the original assumptions of dilution assays. As these effects are volume-independent, these processes likely occur in all dilution assays that our analyses show to be remarkably sensitive to dilution-altered phytoplankton growth and insensitive to actual predation pressure. Incorporating altered growth as well as predation, we present a logical framework that categorizes locations by the relative dominance of these mechanisms, with general applicability to dilution-based assays. [ABSTRACT FROM AUTHOR]

The properties of oxidation of dichloroethene (DCE) and trichloroethylene (TCE) by three mutant strains of Pseudomonas butanovora containing single amino acid substitutions in the α-subunit of butane monooxygenase hydroxylase (BMOH-α) were compared to the properties of the wild-type strain (Rev WT). The rates of oxidation of three chloroethenes (CEs) were reduced in mutant strain G113N and corresponded with a lower maximum rate of butane oxidation. The rate of TCE degradation was reduced by one-half in mutant strain L279F, whereas the rates of DCE oxidation were the same as those in Rev WT. Evidence was obtained that the composition of products of CE oxidation differed between Rev WT and some of the mutant strains. For example, while Rev WT released nearly all available chlorine stoichiometrically during CE oxidation, strain F321Y released about 40% of the chlorine during 1,2-cis-DCE and TCE oxidation, and strain G113N released between 14 and 25% of the available chlorine during oxidation of DCE and 56% of the available chlorine during oxidation of TCE. Whereas Rev WT, strain L279F, and strain F321Y formed stoichiometric amounts of 1,2-cis-DCE epoxide during oxidation of 1,2-cis-DCE, only about 50% of the 1,2-cis-DCE oxidized by strain G113N was detected as the epoxide. Evidence was obtained that 1,2-cis-DCE epoxide was a substrate for butane monooxygenase (BMO) that was oxidized after the parent compound was consumed. Yet all of the mutant strains released less than 40% of the available 1,2-cis-DCE chlorine, suggesting that they have altered activity towards the epoxide. In addition, strain G113N was unable to degrade the epoxide. TCE epoxide was detected during exposure of Rev WT and strain F321Y to TCE but was not detected with strains L279F and G113N. Lactate-dependent O2 uptake rates were differentially affected by DCE degradation in the mutant strains, providing evidence that some products released by the altered BMOs reduced the impact of CE on cellular toxicity. The use of CEs as substrates in combination with P. butanovora BMOH-α mutants might allow insights into the catalytic mechanism of BMO to be obtained. [ABSTRACT FROM AUTHOR]

Butane monooxygenase (BMO) from Pseudomonas butanovora has high homology to soluble methane monooxygenase (sMMO), and both oxidize a wide range of hydrocarbons; yet previous studies have not demonstrated methane oxidation by BMO. Studies to understand the basis for this difference were initiated by making single-amino-acid substitutions in the hydroxylase α subunit of butane monooxygenase (BMOH-α) in P. butanovora. Residues likely to be within hydrophobic cavities, adjacent to the diiron center, and on the surface of BMOH-α were altered to the corresponding residues from the α subunit of sMMO. In vivo studies of five site-directed mutants were carried out to initiate mechanistic investigations of BMO. Growth rates of mutant strains G113N and L279F on butane were dramatically slower than the rate seen with the control P. butanovora wild-type strain (Rev WT). The specific activities of BMO in these strains were sevenfold lower than those of Rev WT. Strains G113N and L279F also showed 277- and 5.5-fold increases in the ratio of the rates of 2-butanol production to 1-butanol production compared to Rev WT. Propane oxidation by strain G113N was exclusively subterminal and led to accumulation of acetone, which P. butanovora could not further metabolize. Methane oxidation was measurable for all strains, although accumulation of 23 µM methanol led to complete inhibition of methane oxidation in strain Rev WT. In contrast, methane oxidation by strain G113N was not completely inhibited until the methanol concentration reached 83 µM. The structural significance of the results obtained in this study is discussed using a three-dimensional model of BMOH-α. [ABSTRACT FROM AUTHOR]

The abundance and productivity of phytoplankton constrain energy transfer through marine food webs and the export of organic carbon to the deep ocean. Bio‐optical measurements correlate well with phytoplankton carbon (Cphyto), but the effect of taxonomic variability on this relationship is still uncertain. Here, we explore how changes in phytoplankton community composition influence the relationship between the particulate backscatter coefficient (bbp) and Cphyto and present a new approach to estimate phytoplankton biomass more accurately using bbp. We found that using a fixed scaling factor for the conversion of bbp to Cphyto could lead to the underestimation or overestimation of biomass, depending on the dominant taxonomic group in the phytoplankton community. In addition, we demonstrate how a simple ratio of absorption at two wavelengths can be used to provide a coarse approximation of phytoplankton community composition when scaling bbp to Cphyto, thereby improving the estimation of net primary production. [ABSTRACT FROM AUTHOR]

Summary: Plants and phytoplankton are natural sources of the volatile organic compounds (VOCs) acetone and isoprene, which are reactive and can alter atmospheric chemistry. In earlier research we reported that, when co‐cultured with a diatom, the marine bacterium Pelagibacter (strain HTCC1062; 'SAR11 clade') reduced the concentration of compounds tentatively identified as acetone and isoprene. In this study, experiments with Pelagibacter monocultures confirmed that these cells are capable of metabolizing acetone and isoprene at rates similar to bacterial communities in seawater and high enough to consume substantial fractions of the total marine acetone and isoprene budgets if extrapolated to global SAR11 populations. Homologues of an acetone/cyclohexanone monooxygenase were identified in the HTCC1062 genome and in the genomes of a wide variety of other abundant marine taxa, and were expressed at substantial levels (c. 10−4 of transcripts) across TARA oceans metatranscriptomes from ocean surface samples. The HTCC1062 genome lacks the canonical isoprene degradation pathway, suggesting an unknown alternative biochemical pathway is used by these cells for isoprene uptake. Fosmidomycin, an inhibitor of bacterial isoprenoid biosynthesis, blocked HTCC1062 growth, but the cells were rescued when isoprene was added to the culture, indicating SAR11 cells may be capable of synthesizing isoprenoid compounds from exogenous isoprene. [ABSTRACT FROM AUTHOR]

This paper examines the sociology of education from the perspective of its recent history and attempts to assess the current state of the field. The authors argue that cognate disciplines such as economics and social policy have taken over some of the key questions that were once the preserve of sociology of education. This raises the question of what is lost if the sociology of education is no longer making a significant contribution, in key areas, to the major educational, social and economic issues of the day. [ABSTRACT FROM AUTHOR]

This paper advances the position that sociology needs to develop an approach to research which focuses on fundamental social problems. In doing so it shares many of the intellectual values and goals of political arithmetic while seeking to move methodologically beyond it. Since such problems are complex they will require, typically, interdisciplinary input and a concomitant approach to the development and appraisal of theories. We are not, therefore, advocating the primacy of sociology but arguing that it has a distinctive part to play in addressing the fundamental problems of the twenty-first century. However, a policy-oriented sociology has also to take up the task, so clearly defined by the tradition of political arithmetic, which is to hold governments to account. Consequently a central principle of a new policy science is that it should contribute to democratic debate about policy. [ABSTRACT FROM AUTHOR]

Marine phytoplankton, and in particular diatoms, are responsible for almost half of all primary production on Earth. Diatom species thrive from polar to tropical waters and across light environments that are highly complex to relatively benign, and so have evolved highly divergent strategies for regulating light capture and utilization. It is increasingly well established that diatoms have achieved such successful ecosystem dominance by regulating excitation energy available for generating photosynthetic energy via highly flexible light harvesting strategies. However, how different light harvesting strategies and downstream pathways for oxygen production and consumption interact to balance excitation pressure remains unknown. We therefore examined the responses of three diatom taxa adapted to inherently different light climates (estuarine Thalassioisira weissflogii, coastal Thalassiosira pseudonana and oceanic Thalassiosira oceanica) during transient shifts from a moderate to high growth irradiance (85 to 1200 μmol photons m-2 s-1). Transient high light exposure caused T. weissflogii to rapidly downregulate PSII with substantial nonphotochemical quenching, protecting PSII from inactivation or damage, and obviating the need for induction of O2 consuming (light-dependent respiration, LDR) pathways. In contrast, T. oceanica retained high excitation pressure on PSII, but with little change in RCII photochemical turnover, thereby requiring moderate repair activity and greater reliance on LDR. T. pseudonana exhibited an intermediate response compared to the other two diatom species, exhibiting some downregulation and inactivation of PSII, but high repair of PSII and induction of reversible PSII nonphotochemical quenching, with some LDR. Together, these data demonstrate a range of strategies for balancing light harvesting and utilization across diatom species, which reflect their adaptation to sustain photosynthesis under environments with inherently different light regimes. [ABSTRACT FROM AUTHOR]

Summary: Volatile organic compounds (VOCs) produced by phytoplankton are molecules with high vapor pressures that can diffuse across cell membranes into the environment, where they become public goods. VOCs likely comprise a significant component of the marine dissolved organic carbon (DOC) pool utilized by microorganisms, but they are often overlooked as growth substrates because their diffusivity imposes analytical challenges. The roles of VOCs in the growth of the photoautotrophic diatom Thalassiosira pseudonana and heterotrophic bacterium Pelagibacter sp. HTCC1062 (SAR11) were examined using co‐cultures and proton‐transfer reaction time‐of‐flight mass spectrometry. VOCs at 82 m/z values were produced in the cultures, and the concentrations of 9 of these m/z values changed in co‐culture relative to the diatom monoculture. Several of the m/z values were putatively identified, and their metabolism by HTCC1062 was confirmed by measuring ATP production. Diatom carbon fixation rates in co‐culture with HTCC1062 were 20.3% higher than the diatom monoculture. Removal of VOCs from the T. pseudonana monoculture using a hydrocarbon trap caused a similar increase in carbon fixation (18.1%). These results show that a wide range of VOCs are cycled in the environment, and the flux of VOCs from phytoplankton to bacterioplankton imposes a large and unexpected tax on phytoplankton photosynthesis. [ABSTRACT FROM AUTHOR]

The reproductive strategy of diatoms includes asexual and sexual phases, but in many species, including the model centric diatom Thalassiosira pseudonana, sexual reproduction has never been observed. Furthermore, the environmental factors that trigger sexual reproduction in diatoms are not understood. Although genome sequences of a few diatoms are available, little is known about the molecular basis for sexual reproduction. Here we show that ammonium reliably induces the key sexual morphologies, including oogonia, auxospores, and spermatogonia, in two strains of T. pseudonana, T. weissflogii, and Cyclotella cryptica. RNA sequencing revealed 1,274 genes whose expression patterns changed when T. pseudonana was induced into sexual reproduction by ammonium. Some of the induced genes are linked to meiosis or encode flagellar structures of heterokont and cryptophyte algae. The identification of ammonium as an environmental trigger suggests an unexpected link between diatom bloom dynamics and strategies for enhancing population genetic diversity. [ABSTRACT FROM AUTHOR]

Metastasis is the cause of more than 90% of all cancer deaths. Despite this fact, most anticancer therapeutics currently in clinical use have limited efficacy in treating established metastases. Here, we identify the endoplasmic reticulum chaperone protein, glucose-regulated protein 78 (GRP78), as a metastatic dependency in several highly metastatic cancer cell models. We find that GRP78 is consistently upregulated when highly metastatic cancer cells colonize the lung microenvironment and that mitigation of GRP78 upregulation via short hairpin RNA or treatment with the small molecule IT-139, which is currently under clinical investigation for the treatment of primary tumors, inhibits metastatic growth in the lung microenvironment. Inhibition of GRP78 upregulation and an associated reduction in metastatic potential have been shown in four highly metastatic cell line models: three human osteosarcomas and one murine mammary adenocarcinoma. Lastly, we show that downmodulation of GRP78 in highly metastatic cancer cells significantly increases median survival times in ourin vivo animal model of experimental metastasis. Collectively, our data indicate that GRP78 is an attractive target for the development of antimetastatic therapies. [ABSTRACT FROM AUTHOR]

Abstract: Submarine volcanic eruptions can result in both real and apparent changes in marine algal communities, e.g., increases in phytoplankton biomass and/or growth rates that can cover thousands of square kilometers. Satellite ocean color monitoring detects these changes as increases in chlorophyll and particulate backscattering. Detailed, high resolution analysis is needed to separate the optical effects of volcanic products from the response of the marine algal community. It is possible to calculate an index, which maps the magnitude of improbable change (relative to long term average conditions) following known volcanic eruptions by using low resolution, initial estimates of chlorophyll and backscatter along with an archived history of satellite data. We apply multivariate probability analysis to changes in global satellite ocean chlorophyll and particulate backscatter data to create a new metric for observing apparent biological responses to submarine eruptions. Several examples are shown, illustrating the sensitivity of our improbability mapping index to known submarine volcanic events, yielding a potentially robust method for the detection of new events in remote locations. [Copyright &y& Elsevier]

The SAR11 Alphaproteobacteria are the most abundant heterotrophs in the oceans and are believed to play a major role in mineralizing marine dissolved organic carbon. Their genomes are among the smallest known for free-living heterotrophic cells, raising questions about how they successfully utilize complex organic matter with a limited metabolic repertoire. Here we show that conserved genes in SAR11 subgroup Ia (Candidatus Pelagibacter ubique) genomes encode pathways for the oxidation of a variety of one-carbon compounds and methyl functional groups from methylated compounds. These pathways were predicted to produce energy by tetrahydrofolate (THF)-mediated oxidation, but not to support the net assimilation of biomass from C1 compounds. Measurements of cellular ATP content and the oxidation of 14C-labeled compounds to 14CO2 indicated that methanol, formaldehyde, methylamine, and methyl groups from glycine betaine (GBT), trimethylamine (TMA), trimethylamine N-oxide (TMAO), and dimethylsulfoniopropionate (DMSP) were oxidized by axenic cultures of the SAR11 strain Ca. P. ubique HTCC1062. Analyses of metagenomic data showed that genes for C1 metabolism occur at a high frequency in natural SAR11 populations. In short term incubations, natural communities of Sargasso Sea microbial plankton expressed a potential for the oxidation of 14C-labeled formate, formaldehyde, methanol and TMAO that was similar to cultured SAR11 cells and, like cultured SAR11 cells, incorporated a much larger percentage of pyruvate and glucose (27-35%) than of C1 compounds (2-6%) into biomass. Collectively, these genomic, cellular and environmental data show a surprising capacity for demethylation and C1 oxidation in SAR11 cultures and in natural microbial communities dominated by SAR11, and support the conclusion that C1 oxidation might be a significant conduit by which dissolved organic carbon is recycled to CO2 in the upper ocean. [ABSTRACT FROM AUTHOR]

High-throughput mRNA differential display (DD) was used to identify genes induced by cyclohexane inBrachymonas petroleovoransCHX, a recently isolatedβ-proteobacterium that grows on cyclohexane. Two metabolic gene clusters were identified multiple times in independent reverse transcription polymerase chain reactions (RT-PCR) in the course of this DD experiment. These clusters encode genes believed to be required for cyclohexane metabolism. One gene cluster (8 kb) encodes the subunits of a multicomponent hydroxylase related to the soluble butane ofPseudomonas butanovoraand methane monooxygenases (sMMO) of methanotrophs. We propose that this butane monooxygenase homologue carries out the oxidation of cyclohexane into cyclohexanol during growth. A second gene cluster (11 kb) contains almost all the genes required for the oxidation of cyclohexanol to adipic acid. Real-time PCR experiments confirmed that genes from both clusters are induced by cyclohexane. The role of the Baeyer–Villiger cyclohexanone monooxygenase of the second cluster was confirmed by heterologous expression inEscherichia coli. [ABSTRACT FROM AUTHOR]