43 results on '"John Baech"'
Search Results
2. Severe antibody‐mediated transfusion‐related acute lung injury in an obstetric patient following transfusion of fresh frozen plasma from a non‐transfused male blood donor
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Charlotte Nielsen Agergaard, Thure Mors Haunstrup, Anne‐Louise Fjordside, John Baech, Rudi Steffensen, and Kaspar René Nielsen
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neutrophil antibodies ,plasma ,TRALI ,Transfusion ,Medicine ,Medicine (General) ,R5-920 - Abstract
Abstract Transfusion‐Related Acute Lung Injury (TRALI) has been associated with neutrophil reacting antibodies in transfused blood products. We report a case of life‐threatening TRALI in an obstetric patient triggered by transfusion from a non‐transfused male blood donor. A residual risk of TRALI exist, even in a male‐only plasma setting.
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- 2021
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3. Stringent or nonstringent complete remission and prognosis in acute myeloid leukemia: a Danish population-based study
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Andreas K. Øvlisen, Anders Oest, Mette D. Bendtsen, John Bæch, Preben Johansen, Line S. Lynggaard, Ingolf Mølle, Thomas B. Mortensen, Duruta Weber, Gideon Ertner, Claudia Schöllkopf, Jesper Q. Thomassen, Ove Juul Nielsen, Lene Sofie Granfeldt Østgård, Martin Bøgsted, Karen Dybkær, Hans E. Johnsen, and Marianne T. Severinsen
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Specialties of internal medicine ,RC581-951 - Abstract
Abstract: Stringent complete remission (sCR) of acute myeloid leukemia is defined as normal hematopoiesis after therapy. Less sCR, including non-sCR, was introduced as insufficient blood platelet, neutrophil, or erythrocyte recovery. These latter characteristics were defined retrospectively as postremission transfusion dependency and were suggested to be of prognostic value. In the present report, we evaluated the prognostic impact of achieving sCR and non-sCR in the Danish National Acute Leukaemia Registry, including 769 patients registered with classical CR (ie,
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- 2018
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4. Storage time of intraoperative transfused allogeneic red blood cells is not associated with new-onset postoperative atrial fibrillation in cardiac surgery.
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Jiwei Gu, Regitze Kuhr Skals, Christian Torp-Pedersen, Søren Lundbye-Christensen, Carl-Johan Jakobsen, John Bæch, Mikkel Steen Petersen, and Jan Jesper Andreasen
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Medicine ,Science - Abstract
BACKGROUND:Allogeneic red blood cell (RBC) transfusion has been associated with new-onset postoperative atrial fibrillation (POAF) following cardiac surgery. Prolonged storage time of RBC may increase the risk. The primary aim of the study was to evaluate whether the storage time of RBC is associated with development of POAF. MATERIALS AND METHODS:Pre-, per- and postoperative data were retrieved from the Western Denmark Heart Registry and local blood banks regarding patients who underwent coronary artery bypass surgery, valve surgery or combined procedures in Aalborg or Aarhus University Hospital during 2010-2014. Multiple logistic regression was used to determine the risk of POAF according to transfusion of RBC on the day of surgery. Furthermore, we determined trend in storage time of RBC according to risk of POAF using restricted cubic splines. Patients with a history of preoperative atrial fibrillation, patients who received transfusions preoperative and patients who died at the day of surgery were among excluded patients. RESULTS:A total of 2,978 patients with a mean age of 66.4 years were included and 609 patients (21%) received RBC transfusion on the day of surgery. POAF developed in 752 patients (25%) and transfused patients were at an increased risk compared with non-transfused patients (adjusted Odds Ratios for patients receiving RBC: 1.37; 95% CI: 1.11-1.69, P-value = 0.004). However, RBC transfusion was not necessarily the cause of POAF and may only be a marker for development of POAF. There was no significant association between storage time of RBC and POAF. CONCLUSIONS:In contrast to intraoperative allogeneic RBC transfusion in general, increased storage time of RBC is not associated with development of POAF in cardiac surgery.
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- 2017
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5. Inherited Inflammatory Response Genes Are Associated with B-Cell Non-Hodgkin's Lymphoma Risk and Survival.
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Kaspar René Nielsen, Rudi Steffensen, Mette Dahl Bendtsen, Maria Rodrigo-Domingo, John Baech, Thure Mors Haunstrup, Kim Steve Bergkvist, Alexander Schmitz, Julie Stoeveve Boedker, Preben Johansen, Karen Dybkaeær, Martin Boeøgsted, and Hans Erik Johnsen
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Medicine ,Science - Abstract
BackgroundMalignant B-cell clones are affected by both acquired genetic alterations and by inherited genetic variations changing the inflammatory tumour microenvironment.MethodsWe investigated 50 inflammatory response gene polymorphisms in 355 B-cell non-Hodgkin's lymphoma (B-NHL) samples encompassing 216 diffuse large B cell lymphoma (DLBCL) and 139 follicular lymphoma (FL) and 307 controls. The effect of single genes and haplotypes were investigated and gene-expression analysis was applied for selected genes. Since interaction between risk genes can have a large impact on phenotype, two-way gene-gene interaction analysis was included.ResultsWe found inherited SNPs in genes critical for inflammatory pathways; TLR9, IL4, TAP2, IL2RA, FCGR2A, TNFA, IL10RB, GALNT12, IL12A and IL1B were significantly associated with disease risk and SELE, IL1RN, TNFA, TAP2, MBL2, IL5, CX3CR1, CHI3L1 and IL12A were, associated with overall survival (OS) in specific diagnostic entities of B-NHL. We discovered noteworthy interactions between DLBCL risk alleles on IL10 and IL4RA and FL risk alleles on IL4RA and IL4. In relation to OS, a highly significant interaction was observed in DLBCL for IL4RA (rs1805010) * IL10 (rs1800890) (HR = 0.11 (0.02-0.50)). Finally, we explored the expression of risk genes from the gene-gene interaction analysis in normal B-cell subtypes showing a different expression of IL4RA, IL10, IL10RB genes supporting a pathogenetic effect of these interactions in the germinal center.ConclusionsThe present findings support the importance of inflammatory genes in B-cell lymphomas. We found association between polymorphic sites in inflammatory response genes and risk as well as outcome in B-NHL and suggest an effect of gene-gene interactions during the stepwise oncogenesis.
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- 2015
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6. Level of unique T cell clonotypes is associated with clonal hematopoiesis and survival in patients with lymphoma undergoing ASCT
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Simon Husby, Gustav Ø. Jørgensen, Francesco Favero, Jakob Schmidt Jespersen, Francisco G. Rodriguez-Gonzalez, Christian Nielsen, Betina Sorensen, Lene H. Ebbesen, John Bæch, Eva K. Haastrup, Pär Josefsson, Michael Thorsgaard, Peter Brown, Tarec C. El-Galaly, Thomas Stauffer Larsen, Joachim Weischenfeldt, and Kirsten Grønbæk
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Transplantation ,Lymphoma ,T-Lymphocytes ,Hematopoietic Stem Cell Transplantation ,Humans ,Hematology ,Clonal Hematopoiesis ,Transplantation, Autologous - Published
- 2022
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7. Association between human leukocyte antigens (HLAs) and human neutrophil antigens (HNAs) and autoimmune neutropenia of infancy in Danish patients
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Rudi Steffensen, Signe Rolskov Bojsen, Kaspar René Nielsen, Tania Nicole Masmas, John Bæch, Anne-Louise Fjordside, and Thure Mors Haunstrup T
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Neutropenia ,Genotype ,Neutrophils ,Denmark ,genotype ,Immunology ,Autoimmunity ,Human leukocyte antigen ,Immunoglobulin G ,03 medical and health sciences ,0302 clinical medicine ,Antigen ,HLA Antigens ,medicine ,Immunology and Allergy ,Humans ,neutropenia ,030212 general & internal medicine ,biology ,business.industry ,Haplotype ,Autoantibody ,Infant ,food and beverages ,autoimmune ,Original Articles ,Odds ratio ,medicine.disease ,HLA ,030228 respiratory system ,Autoimmune neutropenia ,Pediatrics, Perinatology and Child Health ,HNA ,biology.protein ,Original Article ,Other ,Antibody ,business - Abstract
BACKGROUND: Autoimmune neutropenia of infancy (AIN) is a frequent cause of neutropenia in children. The disease is caused by antibodies against epitopes on the immunoglobulin G (IgG) Fc receptor type 3b (FcγIIIb). We investigated the possible association of human neutrophil antigens (HNA), human leukocyte antigen (HLA)-DR, and HLA-DQ alleles with AIN and the association of these genotypes with the presence of autoantibodies.METHODS: Eighty AIN cases with a median age of 13.5 months were included. Controls were healthy unrelated Danish blood donors. Anti-HNA-1a autoantibodies were detected using a flow cytometric granulocyte immunofluorescence test (Flow-GIFT) with phenotyped donor cells for detection of antibody specificity. Molecular determination of HNA genotypes was determined using real-time polymerase chain reaction (q-PCR). High-resolution HLA-DRB1 and HLA-DQB1 were determined by next-generation sequencing.RESULTS: Antibodies against HNA-1a were detected in 51% (n = 41) of AIN patients, and anti-HNA-1b was detected in 3% (n = 2) of cases. In 46% of cases, the antibodies were anti-FcγIIIb-reactive. FCGR3B*01+,*02-,*03- was more common (odds ratio, 6.70; P < .0001), and FCGR3B*01-,*02+,*03- was less common (odds ratio, 0.30; P < .0001) among AIN cases. HNA-1a antibodies were significantly more frequent among AIN cases with the FCGR3B*01+,*02-,*03- genotype (odds ratio, 3.86; P < .007). The HLA-DRB1*14 - HLA-DQB1*05:03 haplotype was significantly more common (odds ratio, 7.44; P < .0001) in AIN patients.CONCLUSION: The HLA haplotype HLA-DRB1*14 - DQB1*05:03 is associated with Danish AIN cases. Among Danish AIN patients, anti-HNA-1a is the most common autoantibody, and the antibody is more common in cases with the FCGR3B*01+,*02-,*03- genotype.
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- 2021
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8. Clinical impact of clonal hematopoiesis in patients with lymphoma undergoing ASCT:a national population-based cohort study
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Kirsten Grønbæk, Eva Haastrup, Kathrine Grell, Pär Josefsson, Erik Segel, Per Boye Hansen, Jakob Werner Hansen, Betina Samuelsen Sørensen, Francesco Favero, Ilse Christiansen, Christian Nielsen, Joachim Weischenfeldt, Thomas Stauffer Larsen, Erik Clasen-Linde, John Bæch, Peter de Nully Brown, Susanne G. Saekmose, F.G. Rodriguez‐Gonzalez, Lene Hyldahl Ebbesen, Simon Husby, Anne Fischer-Nielsen, Pernille Andersen, Tarec Christoffer El-Galaly, Michael Thorsgaard, Bente Arboe, and Lene Meldgaard
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Adult ,Male ,0301 basic medicine ,Oncology ,Cancer Research ,medicine.medical_specialty ,DNA Repair ,Lymphoma ,medicine.medical_treatment ,Population ,Antineoplastic Agents ,Transplantation, Autologous ,03 medical and health sciences ,0302 clinical medicine ,Intensive care ,Internal medicine ,medicine ,Humans ,Risk factor ,education ,Aged ,Retrospective Studies ,education.field_of_study ,Chemotherapy ,business.industry ,Hematopoietic Stem Cell Transplantation ,Cancer ,Hematology ,Middle Aged ,medicine.disease ,Transplantation ,Leukemia ,030104 developmental biology ,030220 oncology & carcinogenesis ,Female ,Clonal Hematopoiesis ,business - Abstract
Clonal hematopoiesis of indeterminate potential (CHIP) is suspected of being a risk factor for patients with cancer. This study aimed to assess the clinical consequences of CHIP in patients with lymphoma intended for high-dose chemotherapy and autologous stem-cell transplantation (ASCT) in a population-based setting. We identified 892 lymphoma patients who had undergone stem cell harvest at all transplant centers in Denmark. A total of 565 patients had an available harvest sample, which was analysed for CHIP by next-generation sequencing, and the median follow-up was 9.1 years. Of the patients who were intended for immediate ASCT, 25.5% (112/440) carried at least one CHIP mutation. In contrast to previous single-center studies CHIP was not associated with inferior overall survival (OS) in multivariate analyses. However, patients with mutations in genes of the DNA repair pathway (PPM1D, TP53, RAD21, BRCC3) had a significant inferior OS (HR after 1 year of follow-up 2.79, 95% confidence interval 1.71–4.56; p < 0.0001), which also was evident in multivariate analysis (p = 0.00067). These patients had also increased rates of therapy-related leukemia and admission to intensive care. Furthermore, in patients who did not undergo immediate ASCT, a significant inferior OS of individuals with DNA repair mutations was also identified (p = 0.003).
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- 2020
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9. Author response for 'Association between human leukocyte antigens (hlas) and human neutrophil antigens (hnas) and autoimmune neutropenia of infancy in danish patients'
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Kaspar René Nielsen, Anne-Louise Fjordside, Signe Rolskov Bojsen, Tania Nicole Masmas, Rudi Steffensen, John Bæch, and Thure Mors Haunstrup T
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Danish ,Human Neutrophil Antigens ,business.industry ,Autoimmune neutropenia ,Immunology ,medicine ,language ,Human leukocyte antigen ,medicine.disease ,business ,language.human_language - Published
- 2020
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10. Level of Unique T-Cell Clonotypes Are Associated with Clonal Hematopoiesis and Survival in Patients with Lymphoma Intended for Autologous Stem Cell Transplant
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Francesco Favero, Lene Hyldahl Ebbesen, Christian Nielsen, Michael Thorsgaard, Betina Samuelsen Sørensen, Simon Husby, Kirsten Grønbæk, Eva Kannik Hastrup, Tarec Christoffer El-Galaly, Joachim Weisenfeldt, Thomas Stauffer Larsen, Jakob S. Jespersen, Gustav Ørting Jørgensen, Pär Josefsson, John Bæch, Peter de Nully Brown, and German G. R. Gonzalez
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T cell ,Immunology ,Clonal hematopoiesis ,Cell Biology ,Hematology ,Biology ,medicine.disease ,Biochemistry ,Lymphoma ,medicine.anatomical_structure ,medicine ,Cancer research ,In patient ,Stem cell - Abstract
The advent of novel immunotherapy (CAR-T cell therapy, bispecific CD20×CD3 antibodies) have highlighted the importance of T-cells in the treatment of lymphoma. However, overall T-cell characteristics have not been properly examined in patients receiving conventional chemotherapy. Next-generation sequencing (NGS) of the T-cell receptor (TCR) has enabled the possibility of identifying hundred thousands of unique T-cell clones in a single patient sample. Here we analyzed the impact of systemic TCR diversity and T-cell clonotypes in patients with Non-Hodgkin lymphoma (NHL) and Hodgkin-lymphoma (HL) receiving high-dose chemotherapy with stem cell support (HDT/ASCT). Autologous peripheral blood stem cell harvest samples from patients with lymphoma (predominantly B-cell NHL) were collected as part of a national population-based study (Husby et al. - Leukemia 2020). We performed high-throughput RNA-based sequencing of the V, D and J segment of the TCR β-chain to identify unique clonal rearrangements. To ensure supreme quality for TCR repertoire calculations, samples with less than 100.000 aligned reads to the TCR β chain were omitted from further analysis. By using the MiXCR bioinformatic pipeline we analyzed the number of unique clonotypes and TCR repertoire diversity, as calculated by the Simpson index. T-cell clonotype and diversity were for categorical analyses split in two groups by the median, respectively. A total of 96 patients with lymphoma who were intended for HDT/ASCT were included and analyzed for TCR characteristics. In brief, median age was 56 years, 64% were male and major subtypes were diffuse large B-cell lymphoma (37%), follicular lymphoma (24%), Hodgkin lymphoma (16%), and mantle cell lymphoma (14%). Median follow-up time was 6.7 years. Number of unique T-cell clonotypes was not associated with age (Fig. 1A), but low levels were highly associated with inferior survival (Fig. 1B, p=0.008), especially in the first year of follow-up. In contrast, elderly patients had a trend toward lower TCR diversity (Fig. 1C, p=0.08), but this did not impact overall survival (Fig. 1D). Low T-cell clonotype levels was also significantly associated with presence of clonal hematopoiesis (Fig. 1E, p=0.033). No association with clonal hematopoiesis was found with regard to TCR diversity (Fig. 1F). Furthermore, we investigated TCR repertoire in relation to subsequent severe infections (defined as sepsis, pneumonia, or invasive fungal infection). Number of unique T-cell clonotypes did not have an impact (Fig. 1F), but remarkably patients with a high T-cell diversity had significant increased incidence of severe infections in the first 500 days after sampling (Fig. 1G, p=0.029). This implies that patients who have a high T-cell diversity before high-dose chemotherapy, are more capable of mounting an immune response against infectious pathogens. These findings should be validated in larger homogenous cohorts. However, they imply the importance of inherent immune characteristics in patients with lymphoma. Although the immune response is exceedingly complex, we have identified systemic T-cell characteristics that associate with several important clinical variables. Assessment of systemic immunological parameters in patients with aggressive lymphoma may in the future inform on choice of optimal personalized therapy. Figure 1 Figure 1. Disclosures El-Galaly: ROCHE Ltd: Ended employment in the past 24 months; Abbvie: Other: Speakers fee. Larsen: Odense University Hospital, Denmark: Current Employment; Celgene: Consultancy; BMS: Consultancy; Novartis: Consultancy; Gilead: Consultancy.
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- 2021
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11. TREATMENT STRATEGIES AND OUTCOMES IN DIFFUSE LARGE B-CELL LYMPHOMA OF THE ELDERLY: A DANISH POPULATION-BASED COHORT STUDY OF 1,011 PATIENTS
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P H Jensen, Michael Roost Clausen, Henriette Engberg, Lene Melgaard Knudsen, D. Haziri, Helene Bjørg Kristensen, Sonja Wehberg, Maja Bech Juul, R. X. Valentin, Henrik Frederiksen, Lars Munksgaard, Lene Schurmann, Tarec Christoffer El-Galaly, Andriette Dessau-Arp, John Bæch, and Thomas Stauffer Larsen
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Oncology ,Cancer Research ,medicine.medical_specialty ,business.industry ,Danish population ,Hematology ,General Medicine ,medicine.disease ,03 medical and health sciences ,0302 clinical medicine ,030220 oncology & carcinogenesis ,Internal medicine ,medicine ,Treatment strategy ,business ,Diffuse large B-cell lymphoma ,030215 immunology ,Cohort study - Published
- 2017
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12. Stringent or nonstringent complete remission and prognosis in acute myeloid leukemia:a Danish population-based study
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Line Stensig Lynggaard, Martin Bøgsted, Anders Oest, Karen Dybkær, Ove Juul Nielsen, Gideon Ertner, Jesper Q. Thomassen, Marianne Tang Severinsen, Preben Johansen, Hans Erik Johnsen, Mette Dahl Bendtsen, Lene Sofie Granfeldt Østgård, Duruta Weber, Claudia Schöllkopf, Andreas Kiesbye Øvlisen, John Bæch, Ingolf Mølle, and T B Mortensen
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Oncology ,Adult ,medicine.medical_specialty ,Myeloid ,Clinical Trials and Observations ,Denmark ,behavioral disciplines and activities ,03 medical and health sciences ,0302 clinical medicine ,Internal medicine ,hemic and lymphatic diseases ,medicine ,Journal Article ,Humans ,Cell Lineage ,030212 general & internal medicine ,Registries ,Survival analysis ,Aged ,Proportional hazards model ,business.industry ,Hazard ratio ,Remission Induction ,Remission Induction/methods ,Myeloid leukemia ,Hematology ,Middle Aged ,medicine.disease ,Prognosis ,Leukemia, Myeloid, Acute/diagnosis ,Survival Analysis ,Confidence interval ,Denmark/epidemiology ,Leukemia ,Leukemia, Myeloid, Acute ,medicine.anatomical_structure ,030220 oncology & carcinogenesis ,Bone marrow ,business - Abstract
Stringent complete remission (sCR) of acute myeloid leukemia is defined as normal hematopoiesis after therapy. Less sCR, including non-sCR, was introduced as insufficient blood platelet, neutrophil, or erythrocyte recovery. These latter characteristics were defined retrospectively as postremission transfusion dependency and were suggested to be of prognostic value. In the present report, we evaluated the prognostic impact of achieving sCR and non-sCR in the Danish National Acute Leukaemia Registry, including 769 patients registered with classical CR (ie
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- 2018
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13. Clinical Impact of Clonal Hematopoiesis after Autologous Stem Cell Transplantation for Lymphoma:A National Population-Based Cohort Study
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Eva Kannik Hastrup, Simon Husby, Anne Fischer-Nielsen, Erik Segel, Michael Thorsgaard, Christian Nielsen, Bente Arboe, Kathrine Grell, Jakob Werner Hansen, Tarec Christoffer El-Galaly, Lene Hyldahl Ebbesen, Kirsten Grønbæk, German G. R. Gonzalez, Lisbeth Pernille Andersen, Lene Meldgaard Knudsen, Joachim Weisenfeldt, Favero Francesco, Ilse Christiansen, Per Boye Hansen, Erik Clasen-Linde, John Bæch, Thomas Stauffer Larsen, Betina Samuelsen Sørensen, Susanne G. Saekmose, Peter de Nully Brown, and Pär Josefsson
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Oncology ,medicine.medical_specialty ,business.industry ,Immunology ,Follicular lymphoma ,Cancer ,Cell Biology ,Hematology ,medicine.disease ,Biochemistry ,Lymphoma ,Transplantation ,Haematopoiesis ,Autologous stem-cell transplantation ,Internal medicine ,medicine ,Mantle cell lymphoma ,business ,Diffuse large B-cell lymphoma - Abstract
Background: Somatic driver mutations in hematopoietic cells may lead to clonal hematopoiesis of indeterminate potential (CHIP). In patients with lymphoma CHIP has been associated with increased risk of therapy-related myeloid neoplasms (tMN) and inferior survival after autologous stem cell transplantation as demonstrated in a large single center study and in a case-control study (Gibson CJ et al., JCO 2017 and Berger G et al., Blood 2018). Here, we investigated the clinical impact of clonal hematopoiesis in a nation-wide population-based cohort of Danish lymphoma patients undergoing autologous transplant with prospective data from four national patient registries. Methods: Patients with lymphoma who had undergone leukapheresis at all danish transplant centers from 2000 to 2012 were identified. DNA and RNA was extracted from mobilized peripheral blood products. Targeted sequencing of all samples was performed using an Illumina TruSeq Custom Amplicon panel (Illumina, San Diego, CA, USA) designed to cover >95% of mutations associated with CHIP (ASXL1, ASXL2, BCOR, BRCC3, CBL, CREBBP, DNMT3A, ETV6, GNB1, IDH1, IDH2, JAK2, KRAS, NRAS, PPM1D, RAD21, SF3B1, SRSF2, TET2, TP53). To allow detection of low-level mutations and secure variant calling, unique molecular identifiers (UMI's) were used. Filtering of variants was done by stringent criteria consistent with earlier studies. Assessment of mutations was performed blinded to the patients' clinical data. Prospective clinical patient data was obtained for all patients from four national registries, including the Danish Lymphoma Registry (diagnosis, involvement, lymphoma treatment, relapse and death), the Danish National Patient Registry (hospital admission diagnoses and treatments), the Danish Cancer Registry (primary and secondary cancer diagnoses) and the Danish Pathology Database (histopathological examinations and diagnoses), respectively. Results: Samples from 574 patients were included. The median age was 55.5 years (IQR: 45.3 - 62.2) and the median follow-up time for survivors was 9.2 years (IQR: 7.1 - 11.2). The lymphoma subtypes were typical of patients selected for autologous transplantation; diffuse large B-cell lymphoma (191 pts), follicular lymphoma (102 pts), mantle cell lymphoma (88 pts), Hodgkin's lymphoma (80 pts), peripheral T-cell lymphoma (77 pts) and other histologies (36 pts). Of the 574 patients analyzed, 191 (33.3%) of the patients had somatic mutations meeting CHIP criteria (total mutations called=210). The most commonly mutated genes were DNMT3A (n=59, 28%), TET2 (n=48, 23%), PPM1D (n=34, 16%), ASXL1 (n=21, 10%) and TP53 (n=18, 8%). As expected CHIP mutations were more frequent in patients above 60 years (p=0.002). Prevalence of CHIP was associated with an inferior overall survival (p=0.004) and event-free survival (p=0.03). It was also associated with increased risk of biopsy-confirmed tMN (p=0.03) and higher probability of receiving blood transfusions after autologous transplant (p=0.027). Especially patients with mutations in DNA damage response genes PPM1D and TP53 (found in 48 pts, 8.3%) had a significantly increased risk of adverse outcomes. Both overall survival and event-free survival were significantly poorer with the presence of DNA damage pathway mutations (p The impact of low-level mutations and statistical modelling of interactions between parallel outcomes will be presented at the meeting. Conclusion: To our knowledge this is the first population-based study of clonal hematopoiesis in patients with lymphoma. We find that CHIP and particularly mutations in DNA damage response genes (PPM1D/TP53) are associated with increased mortality, which confirms findings from single center studies. These data support the evaluation of CHIP for risk assessment in lymphoma patients before high-dose chemotherapy. Our study also identifies increased rates of several clinically relevant adverse outcomes (severe infections, blood transfusions and secondary cancers) in lymphoma patients with clonal hematopoiesis. Figure 1. Figure 1. Disclosures Grønbæk: Janssen Pharma: Membership on an entity's Board of Directors or advisory committees; Celgene: Membership on an entity's Board of Directors or advisory committees; Otsuka Pharma: Membership on an entity's Board of Directors or advisory committees.
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- 2018
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14. HIGH RISK OF ADVERSE EVENTS AFTER AUTOLOGOUS STEM-CELL TRANSPLANTATION IN LYMPHOMA PATIENTS WITH DNA REPAIR PATHWAY MUTATIONS: A NATION-WIDE COHORT STUDY
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Lene Hyldahl Ebbesen, Joachim Weischenfeldt, T.C. El-Galaly, Francesco Favero, Christian Nielsen, Pernille Andersen, Peter de Nully Brown, Anne Fischer-Nielsen, Simon Husby, Pär Josefsson, Per Boye Hansen, Michael Thorsgaard, Erik Segel, Kirsten Grønbæk, Eva Haastrup, Lene Meldgaard Knudsen, Bente Arboe, F.G. Rodriguez‐Gonzalez, Susanne G. Saekmose, Betina Samuelsen Sørensen, Erik Clasen-Linde, John Bæch, Thomas Stauffer Larsen, Kathrine Grell, Ilse Christiansen, and Jakob Werner Hansen
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Oncology ,Cancer Research ,medicine.medical_specialty ,business.industry ,Hematology ,General Medicine ,DNA Repair Pathway ,medicine.disease ,Lymphoma ,Autologous stem-cell transplantation ,Internal medicine ,medicine ,business ,Adverse effect ,Cohort study - Published
- 2019
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15. Storage time of intraoperative transfused allogeneic red blood cells is not associated with new-onset postoperative atrial fibrillation in cardiac surgery
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Mikkel Steen Petersen, Jan Jesper Andreasen, Christian Torp-Pedersen, Carl-Johan Jakobsen, Regitze Kuhr Skals, Søren Lundbye-Christensen, John Bæch, and Jiwei Gu
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Male ,Time Factors ,Pulmonology ,Valve surgery ,Physiology ,Cardiovascular Procedures ,lcsh:Medicine ,Vascular Surgery ,030204 cardiovascular system & hematology ,Coronary artery bypass surgery ,Postoperative Complications ,0302 clinical medicine ,Atrial Fibrillation ,Medicine and Health Sciences ,Postoperative Period ,030212 general & internal medicine ,Coronary Artery Bypass ,lcsh:Science ,Blood Specimen Collection ,Coronary Artery Bypass Grafting ,Multidisciplinary ,Atrial fibrillation ,Hematology ,Middle Aged ,University hospital ,Clinical Laboratory Sciences ,Body Fluids ,Cardiac surgery ,Blood ,Anesthesia ,Female ,Anatomy ,Erythrocyte Transfusion ,Arrhythmia ,Research Article ,medicine.medical_specialty ,Cardiac Surgery ,Chronic Obstructive Pulmonary Disease ,Cardiology ,Surgical and Invasive Medical Procedures ,New onset ,03 medical and health sciences ,Diagnostic Medicine ,Journal Article ,medicine ,Humans ,Blood Transfusion ,Cardiac Surgical Procedures ,Aged ,Transfusion Medicine ,business.industry ,lcsh:R ,Biology and Life Sciences ,Odds ratio ,medicine.disease ,Surgery ,Increased risk ,lcsh:Q ,business - Abstract
BACKGROUND: Allogeneic red blood cell (RBC) transfusion has been associated with new-onset postoperative atrial fibrillation (POAF) following cardiac surgery. Prolonged storage time of RBC may increase the risk. The primary aim of the study was to evaluate whether the storage time of RBC is associated with development of POAF.MATERIALS AND METHODS: Pre-, per- and postoperative data were retrieved from the Western Denmark Heart Registry and local blood banks regarding patients who underwent coronary artery bypass surgery, valve surgery or combined procedures in Aalborg or Aarhus University Hospital during 2010-2014. Multiple logistic regression was used to determine the risk of POAF according to transfusion of RBC on the day of surgery. Furthermore, we determined trend in storage time of RBC according to risk of POAF using restricted cubic splines. Patients with a history of preoperative atrial fibrillation, patients who received transfusions preoperative and patients who died at the day of surgery were among excluded patients.RESULTS: A total of 2,978 patients with a mean age of 66.4 years were included and 609 patients (21%) received RBC transfusion on the day of surgery. POAF developed in 752 patients (25%) and transfused patients were at an increased risk compared with non-transfused patients (adjusted Odds Ratios for patients receiving RBC: 1.37; 95% CI: 1.11-1.69, P-value = 0.004). However, RBC transfusion was not necessarily the cause of POAF and may only be a marker for development of POAF. There was no significant association between storage time of RBC and POAF.CONCLUSIONS: In contrast to intraoperative allogeneic RBC transfusion in general, increased storage time of RBC is not associated with development of POAF in cardiac surgery.
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- 2017
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16. Interactions between SNPs affecting inflammatory response genes are associated with multiple myeloma disease risk and survival
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Rudi Steffensen, John Bæch, Kim Steve Bergkvist, Anette Vangsted, Julie Støve Bødker, Alexander Schmitz, Liesbeth Oosterhof, Karen Dybkær, Ulla Vogel, Kaspar René Nielsen, Hans Erik Johnsen, Maria Rodrigo-Domingo, Martin Bøgsted, and Preben Johansen
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Male ,Cancer Research ,Genotype ,Gene Expression ,Single-nucleotide polymorphism ,Biology ,Polymorphism, Single Nucleotide ,CHI3L1 ,03 medical and health sciences ,0302 clinical medicine ,Gene Frequency ,Risk Factors ,medicine ,Journal Article ,Humans ,Chitinase-3-Like Protein 1 ,Allele ,Promoter Regions, Genetic ,Allele frequency ,Alleles ,Survival analysis ,Multiple myeloma ,Interleukin-6 ,Tumor Necrosis Factor-alpha ,Haplotype ,Hematology ,Middle Aged ,medicine.disease ,Survival Analysis ,Interleukin-10 ,Haplotypes ,Oncology ,030220 oncology & carcinogenesis ,Immunology ,Cytokines ,Female ,Interleukin-4 ,Inflammation Mediators ,Multiple Myeloma ,030215 immunology - Abstract
The origin of multiple myeloma depends on interactions with stromal cells in the course of normal B-cell differentiation and evolution of immunity. The concept of the present study is that genes involved in MM pathogenesis, such as immune response genes, can be identified by screening for single-nucleotide polymorphisms (SNPs) involved in the immune response and a subsequent statistical analysis that focusses on the association of SNPs, certain haplotypes or SNP-SNP interactions with MM risk and prognosis. We genotyped 348 Danish patients and 355 controls for 13 SNPs located in the TNFA, IL-4, IL-6, IL-10 and CHI3L1 gene promoters. The occurrence of single polymorphisms, haplotypes and SNP-SNP interactions were statistically analyzed for association with disease risk and outcome following high-dose therapy. Identified genes that carried SNPs or haplotypes that were identified as risk or prognostic factors were studied for expression in normal B-cell subsets and myeloma plasma cells. We observed a significantly reduced risk when harboring the TNFA-238A allele (OR = 0.51 (0.29-0.86)) and interactions between the TNFA-1031T/C * and IL-10 -3575T/A (p = .007) as well as the TNFA-308G/A * and IL-10-1082G/A (p = .008) allels. By statistical approaches, we observed association between prognosis and the TNFA-857CC genotype (HR = 2.80 (1.29-6.10)) and IL-10-1082GG + GA genotypes (HR = 1.93 (1.07-3.49)) and interactions between IL-6-174G/C and IL-10-3575T/A (p = .001) and between TNFA-308G/A and IL-4-1098T/G (p= .005). The 'risk genes' were analyzed for expression in normal B-cell subsets (N = 6) from seven healthy donors and we found TNFA and IL-6 expressed both in naïve and in memory B cells when compared to preBI, II, immature and plasma cells. The 'prognosis genes' CHI3L1, IL-6 and IL-10 were differential expressed in malignant plasma cells when comparing poor and good prognosis groups based on to the TC classification. In summary, these findings suggest that TNFA, IL-4, IL-6, IL-10 and CHI3L1 might be important players in MM pathogenesis during disease initiation and drug resistance in multiple myeloma.
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- 2017
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17. Routine noninvasive prenatal screening for fetalRHDin plasma of RhD-negative pregnant women-2 years of screening experience from Denmark
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Morten Hanefeld Dziegiel, F. Banch Clausen, Marianne Antonius Jakobsen, Rudi Steffensen, Rikke Dyhrberg Madsen, M Rudby, Ulrik Sprogøe, Grethe Risum Krog, Tanja Roien Jakobsen, John Bæch, Mette Christiansen, Kaspar René Nielsen, Klaus Rieneck, N Grunnet, and Keld Mikkelsen Homburg
- Subjects
Pregnancy ,Fetus ,Pediatrics ,medicine.medical_specialty ,business.industry ,Obstetrics and Gynecology ,medicine.disease ,Serology ,Prenatal screening ,Cell-free fetal DNA ,RhD negative ,medicine ,Gestation ,business ,Genetics (clinical) - Abstract
Objective Prenatal and postnatal RhD prophylaxis reduces the risk of RhD immunization in pregnancies of RhDnegative women. Based on the result from prenatal screening for the fetal RHD gene, prenatal RhD prophylaxis in Denmark is targeted to RhD-negative women who carry an RhD-positive fetus. Here, we present a 2-year evaluation of a nationwide prenatal RHD screening. Methods Blood samples were drawn from RhD-negative women in gestational week 25. DNA was extracted from maternal plasma and analyzed for the RHD gene. The prenatal RHD results were compared with the serological typing of newborns in 12,668 pregnancies. Early compliance was assessed for 690 pregnancies. Results The sensitivity for the detection of fetal RHD was 99.9% (95% CI: 99.7–99.9%). Unnecessary recommendation of prenatal RhD prophylaxis was avoided in 97.3% of the women carrying an RhD-negative fetus. Fetuses that were seropositive for RhD were not detected in 11 pregnancies (0.087%). The sample uptake percentage was 84.2%, and the compliance for prenatal anti-D administration was 93.2%. Conclusion The high sensitivity, maintained over 2years, underlines the reliability of routine prenatal fetal RHD screening in RhD-negative pregnant women, specifically at 25weeks of gestation. The remaining challenges are logistical and are related to program compliance. © 2014 John Wiley & Sons, Ltd.
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- 2014
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18. Characterization of Memory B-Cells from Thymus and its Impact for DLBCL Classification
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Mette Nyegaard, Alexander Schmitz, Hans Erik Johnsen, Jakob Madsen, Thomas Urup, Kim Steve Bergkvist, Michael Gaihede, Frank Jensen, Marie-Louise M. Grønholdt, John Bæch, Martin Agge Nørgaard, Julie Støve Bødker, Preben Johansen, Tarec Christoffer El-Galaly, Martin Bøgsted, and Karen Dybkær
- Subjects
0301 basic medicine ,Male ,Cancer Research ,Pathology ,medicine.medical_specialty ,B-Lymphocyte Subsets ,CD38 ,CD19 ,Immunophenotyping ,03 medical and health sciences ,0302 clinical medicine ,Genetics ,medicine ,Activation-induced (cytidine) deaminase ,Humans ,Lymphocyte Count ,Molecular Biology ,Aged ,B-Lymphocytes ,biology ,Gene Expression Profiling ,Cell Biology ,Hematology ,Middle Aged ,medicine.disease ,Molecular biology ,Lymphoma ,Gene expression profiling ,Gene Expression Regulation, Neoplastic ,Haematopoiesis ,030104 developmental biology ,Phenotype ,Organ Specificity ,030220 oncology & carcinogenesis ,biology.protein ,Female ,Lymphoma, Large B-Cell, Diffuse ,Immunologic Memory ,Biomarkers ,Signal Transduction - Abstract
The rare memory B-cells in thymus are considered the cell of origin for primary mediastinal large B-cell lymphoma (PMBL). The goals for the present study were to characterize the normal memory B-cell compartment in thymus and support its association to primary mediastinal B-cell lymphoma. Seven paired human tissue samples from thymus and sternum bone marrow were harvested during cardiac surgery. B-cell subsets were phenotyped by Euroflow standard and FACS-sorted for microarray analysis on the Human Exon 1.0 ST Arrays platform. Differentially expressed genes between thymus and bone marrow memory B-cells were identified and correlated to the molecular subclasses of diffuse large B-cell lymphoma. Within thymus, 4% (median, range 2-14%) of the CD45(+) haematopoietic cells were CD19(+) B-cells with a major fraction being CD27(+)/CD38(-) memory B-cells (median 80%, range 76-93%). The bone marrow contained 14% (median, range 3-27%) of which only a minor fraction (median 5%, range 2-10%) was memory B-cells. Global gene expression analysis of the memory B-cell subsets from the two compartments identified 133 genes up-regulated in thymus, including AICDA, REL, STAT1, TNF family, SLAMF1, CD80 and CD86. In addition, Exon 4 and 5 in the 3`end of AICDA was significantly higher expressed in thymus compared to bone marrow. The thymus memory B-cell gene profile was over-expressed in primary mediastinal B-cell lymphoma when compared to other DLBCL subclasses. The present study describes a thymus memory B-cell subset and its gene profile correlated to primary mediastinal B-cell lymphomas, supporting that it may arise from thymus memory B-cells.
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- 2016
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19. Storage time of allogeneic red blood cells is not associated with new-onset postoperative atrial fibrillation in transfused cardiac surgical patients
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Jiwei Gu, Regitze Kuhr Skals, Christian Torp-Pedersen, Søren Lundbye-Christensen, Carl-Johan Jakobsen, John Bæch, Mikkel Steen Petersen, and Jan Jesper Andreasen
- Published
- 2016
20. Frequencies of HNA-1, HNA-3, HNA-4, and HNA-5 in the Danish and Zambian populations determined using a novel TaqMan real time polymerase chain reaction method
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Kim Varming, M. D. Koelbaek, Kaspar René Nielsen, Rudi Steffensen, and John Bæch
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education.field_of_study ,Immunology ,Population ,General Medicine ,Biology ,Biochemistry ,Virology ,Molecular biology ,Genotype frequency ,law.invention ,Real-time polymerase chain reaction ,law ,Genotype ,Genetics ,TaqMan ,Immunology and Allergy ,education ,Genotyping Techniques ,Genotyping ,Polymerase chain reaction - Abstract
In this study, we report a novel real time polymerase chain reaction (Q-PCR) method using TaqMan probes for human neutrophil antigens (HNA)-1, -3, -4, and -5 genotyping. The method was validated in a Caucasian Danish population, a Zambian population, and in clinical samples using three different methods: an in-house polymerase chain reaction with sequence-specific primers (PCR-SSP) method, a commercial available PCR-SSP kit and a novel Q-PCR method. We observed no discrepancy in the genotype frequencies determined by the PCR-SSP methods and the TaqMan assay in the populations studied. In tests of a family of Nigerian origin and in samples carrying the rare SLC44A2*1:2 genotype, different results were produced by the commercial PCR-SSP kit and the real-time TaqMan assay. The TaqMan-based genotyping method was rapid and reproducible, allowing high-throughput HNA-1, -3, -4, and -5 genotyping.
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- 2012
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21. Allelic Discrimination by TaqMan-PCR for Genotyping of Human Neutrophil Antigens
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Rudi, Steffensen, John, Baech, and Kaspar R, Nielsen
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Isoantigens ,Genotype ,Genotyping Techniques ,Neutrophils ,Humans ,DNA ,Polymerase Chain Reaction ,Alleles - Abstract
Neutrophil antigens are implicated in a variety of clinical conditions, including neonatal immune neutropenia, transfusion-related acute lung injury, refractoriness to granulocyte transfusions, febrile transfusion reactions, and autoimmune neutropenia. In this report, we describe simultaneous genotyping of human neutrophil antigens (HNA)-1, -3, -4, and -5 using PCR with allele-specific TaqMan probes and end-point fluorescence detection, which is a robust, rapid, and reproducible method, allowing for high-throughput genotyping.
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- 2015
22. Inherited variation in immune response genes in follicular lymphoma and diffuse large B-cell lymphoma
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Thure Mors Haunstrup, John Bæch, Kaspar René Nielsen, Karen Dybkær, Rudi Steffensen, Martin Bøgsted, Hans Erik Johnsen, and Julie Støve Bødker
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Risk ,Cancer Research ,Follicular lymphoma ,Biology ,Polymorphism, Single Nucleotide ,hemic and lymphatic diseases ,medicine ,Animals ,Humans ,Genetic Predisposition to Disease ,Allele ,Lymphoma, Follicular ,B cell ,Genetic association ,Tumor microenvironment ,Immunity ,Genetic Variation ,Hematology ,medicine.disease ,Prognosis ,Lymphoma ,medicine.anatomical_structure ,Oncology ,Immunology ,Gene polymorphism ,Disease Susceptibility ,Lymphoma, Large B-Cell, Diffuse ,Diffuse large B-cell lymphoma ,Genome-Wide Association Study - Abstract
Diffuse large B-cell lymphoma (DLBCL) and follicular lymphoma (FL) both depend on immune mediated survival and proliferation signals from the tumour microenvironment. Inherited genetic variation influences this complex interaction. Eighty-nine studies investigating immune-response genes in DLBCL and FL were critically reviewed. Relatively consistent association exists for variation in the tumour necrosis factor alpha (TNFA) and interleukin-10 loci and DLBCL risk; for DLBCL outcome association with the TNFA locus exists. Variations at chromosome 6p31-32 were associated with FL risk. Most important, individual risk alleles have been shown to interact with each other. We suggest that the pathogenetic impact of polymorphic genes should include gene-gene interaction analysis and should be validated in preclinical model systems of normal B lymphopoiesis and B-cell malignancies. In the future, large cohort studies of interactions and genome-wide association studies are needed to extend the present findings and explore new risk alleles to be studied in preclinical models.
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- 2015
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23. Allelic Discrimination by TaqMan-PCR for Genotyping of Human Neutrophil Antigens
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Rudi Steffensen, John Bæch, Kaspar René Nielsen, and Bugert, Peter
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business.industry ,Lung injury ,Granulocyte ,medicine.disease ,Molecular biology ,medicine.anatomical_structure ,Antigen ,Autoimmune neutropenia ,Genotype ,Immunology ,medicine ,TaqMan ,Allele ,business ,Genotyping - Abstract
Neutrophil antigens are implicated in a variety of clinical conditions, including neonatal immune neutropenia, transfusion-related acute lung injury, refractoriness to granulocyte transfusions, febrile transfusion reactions, and autoimmune neutropenia. In this report, we describe simultaneous genotyping of human neutrophil antigens (HNA)-1, -3, -4, and -5 using PCR with allele-specific TaqMan probes and end-point fluorescence detection, which is a robust, rapid, and reproducible method, allowing for high-throughput genotyping.
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- 2015
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24. Circulating tumor necrosis factor-α and YKL-40 level is associated with remission status following salvage therapy in relapsed non-Hodgkin lymphoma
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Karen Dybkær, Julia S. Johansen, Hans Erik Johnsen, Anders Ellern Bilgrau, Tarec Christoffer El-Galaly, Lars Moeller Pedersen, Martin Bøgsted, John Bæch, Eva Gaarsdal, Kaspar René Nielsen, and Tobias Wirenfeldt Klausen
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Salvage Therapy ,Cancer Research ,Tumor Necrosis Factor-alpha ,business.industry ,Lymphoma, Non-Hodgkin ,Treatment outcome ,Adipokine ,Salvage therapy ,Hematology ,Prognosis ,Treatment Outcome ,Adipokines ,Oncology ,Lectins ,Cancer research ,Humans ,Medicine ,Hodgkin lymphoma ,Tumor necrosis factor alpha ,Chitinase-3-Like Protein 1 ,Stem cell ,business ,Tumor necrosis factor α ,Biomarkers - Abstract
High-dose therapy (HDT) followed by autologous stem cell transplant (ASCT) has been adopted as the standard second-line approach for patients with relapsed chemosensitive aggressive non-Hodgkin lym...
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- 2015
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25. Stable Phenotype Of B-Cell Subsets Following Cryopreservation and Thawing of Normal Human Lymphocytes Stored in a Tissue Biobank
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Steffen Falgreen, John Bæch, Anette Mai Tramm, Martin Bøgsted, Anders Ellern Bilgrau, Karen Dybkær, Michael Gaihede, Alexander Schmitz, Hans Erik Johnsen, Kim Steve Bergkvist, Chris Ladefoged Jacobsen, Julie Støve Bødker, Simon Mylius Rasmussen, and Malene Krag Kjeldsen
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Pathology ,medicine.medical_specialty ,Histology ,medicine.diagnostic_test ,Microarray analysis techniques ,Cell Biology ,Biology ,Cryopreservation ,Flow cytometry ,Pathology and Forensic Medicine ,Gene expression profiling ,Cryopreserved Cell ,medicine.anatomical_structure ,Tonsil ,medicine ,Cryopreserved Tissue ,Cytometry - Abstract
Background Cryopreservation is an acknowledged procedure to store vital cells for future biomarker analyses. Few studies, however, have analyzed the impact of the cryopreservation on phenotyping. Methods We have performed a controlled comparison of cryopreserved and fresh cellular aliquots prepared from individual healthy donors. We studied circulating B-cell subset membrane markers and global gene expression, respectively by multiparametric flow cytometry and microarray data. Extensive statistical analysis of the generated data tested the concept that “overall, there are no phenotypic differences between cryopreserved and fresh B-cell subsets.” Subsequently, we performed an uncontrolled comparison of tonsil tissue samples. Results By multiparametric flow analysis, we documented no significant changes following cryopreservation of subset frequencies or membrane intensity for the differentiation markers CD19, CD20, CD22, CD27, CD38, CD45, and CD200. By gene expression profiling following cryopreservation, across all samples, only 16 out of 18708 genes were significantly up or down regulated, including FOSB, KLF4, RBP7, ANXA1 or CLC, DEFA3, respectively. Implementation of cryopreserved tissue in our research program allowed us to present a performance analysis, by comparing cryopreserved and fresh tonsil tissue. As expected, phenotypic differences were identified, but to an extent that did not affect the performance of the cryopreserved tissue to generate specific B-cell subset associated gene signatures and assign subset phenotypes to independent tissue samples. Conclusions We have confirmed our working concept and illustrated the usefulness of vital cryopreserved cell suspensions for phenotypic studies of the normal B-cell hierarchy; however, storage procedures need to be delineated by tissue-specific comparative analysis. © 2014 International Clinical Cytometry Society
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- 2014
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26. [TRALI is an overlooked severe complication related to blood transfusion]
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Thure Mors, Haunstrup, John, Baech, Kim, Varming, Bodil Steen, Rasmussen, and Kaspar René, Nielsen
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Transfusion-Related Acute Lung Injury ,HLA Antigens ,Neutrophils ,Acute Lung Injury ,Leukocytes ,Humans ,Blood Donors ,Algorithms - Abstract
Transfusion-related acute lung injury (TRALI) is recognized as the most frequent cause of transfusion-related severe morbidity and mortality. TRALI is characterized by post-transfusional respiratory distress, hypoxaemia and radiographic verified lung infiltration, in the absence of sign of circulatory overload. TRALI is predominantly triggered by human leukocyte antigen or human neutrophil antigen (HNA) antibodies from the transfused blood component. Particularly antibodies against the HNA-3a are involved in severe and fatal TRALI cases. The serological investigation is important to trace and exclude blood donors with TRALI antibodies.
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- 2014
27. TRALI er en overset alvorlig komplikation i forbindelse med blodtransfusion
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Thure Mors Haunstrup, John Baech, Kim Varming, Bodil Steen Rasmussen, and Kaspar René Nielsen
- Abstract
Transfusion-related acute lung injury (TRALI) is recognized as the most frequent cause of transfusion-related severe morbidity and mortality. TRALI is characterized by post-transfusional respiratory distress, hypoxaemia and radiographic verified lung infiltration, in the absence of sign of circulatory overload. TRALI is predominantly triggered by human leukocyte antigen or human neutrophil antigen (HNA) antibodies from the transfused blood component. Particularly antibodies against the HNA-3a are involved in severe and fatal TRALI cases. The serological investigation is important to trace and exclude blood donors with TRALI antibodies.
- Published
- 2014
28. Stable phenotype of B-cell subsets following cryopreservation and thawing of normal human lymphocytes stored in a tissue biobank
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Simon Mylius, Rasmussen, Anders Ellern, Bilgrau, Alexander, Schmitz, Steffen, Falgreen, Kim Steve, Bergkvist, Anette Mai, Tramm, John, Baech, Chris Ladefoged, Jacobsen, Michael, Gaihede, Malene Krag, Kjeldsen, Julie Støve, Bødker, Karen, Dybkaer, Martin, Bøgsted, and Hans Erik, Johnsen
- Subjects
Cryopreservation ,Gene Expression Profiling ,Palatine Tonsil ,B-Lymphocyte Subsets ,Flow Cytometry ,Immunophenotyping ,Kruppel-Like Factor 4 ,Cryoprotective Agents ,Phenotype ,Gene Expression Regulation ,Antigens, CD ,Humans ,Dimethyl Sulfoxide ,Transcriptome ,Biological Specimen Banks ,Oligonucleotide Array Sequence Analysis - Abstract
Background Cryopreservation is an acknowledged procedure to store vital cells for future biomarker analyses. Few studies, however, have analyzed the impact of the cryopreservation on phenotyping. Methods We have performed a controlled comparison of cryopreserved and fresh cellular aliquots prepared from individual healthy donors. We studied circulating B-cell subset membrane markers and global gene expression, respectively by multiparametric flow cytometry and microarray data. Extensive statistical analysis of the generated data tested the concept that "overall, there are phenotypic differences between cryopreserved and fresh B-cell subsets". Subsequently, we performed a consecutive uncontrolled comparison of tonsil tissue samples. Results By multiparametric flow analysis, we documented no significant changes following cryopreservation of subset frequencies or membrane intensity for the differentiation markers CD19, CD20, CD22, CD27, CD38, CD45, and CD200. By gene expression profiling following cryopreservation, across all samples, only 16 out of 18708 genes were significantly up or down regulated, including FOSB, KLF4, RBP7, ANXA1 or CLC, DEFA3, respectively. Implementation of cryopreserved tissue in our research program allowed us to present a performance analysis, by comparing cryopreserved and fresh tonsil tissue. As expected, phenotypic differences were identified, but to an extent that did not affect the performance of the cryopreserved tissue to generate specific B-cell subset associated gene signatures and assign subset phenotypes to independent tissue samples. Conclusions We have confirmed our working concept and illustrated the usefulness of vital cryopreserved cell suspensions for phenotypic studies of the normal B-cell hierarchy; however, storage procedures need to be delineated by tissue specific comparative analysis. © 2014 Clinical Cytometry Society.
- Published
- 2014
29. Validation of the Nordic Flow Cytometry Standard for CD34+ Cell Enumeration in Blood and Autografts: Report from the Third Workshop
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Hans Erik Johnsen, Kirsten Nikolajsen, and John Bæch
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Subset Analysis ,Flow Cytometry Standard ,medicine.medical_specialty ,Cd34 cells ,medicine.medical_treatment ,Coefficient of variation ,Immunology ,Hematology ,Hematopoietic stem cell transplantation ,Leukapheresis ,Biology ,Surgery ,Clinical Practice ,Internal medicine ,medicine ,Enumeration - Abstract
Following two workshops on standardization of enumeration of CD34+ cells in blood and leukapheresis products, the Nordic Stem Cell Laboratory Group (NSCL-G) evaluated the Milan/Mulhouse/Nordic standard in clinical practice during the third workshop (WS-III). This report documents an acceptable interlaboratory variation in the most clinically active laboratories, with a coefficient of variation (CV) below 0.19 in 7 of 8 analyses performed. The introduction of a pan-CD45 antibody in the analysis did not improve the CV. Comparison of two different CD34 class II antibodies on a total of 99 samples and procedures with and without washing on a total of 96 samples revealed a significant correlation (r2 > 0.99) for all analyses. Finally, subset analysis of uncommitted and lineage-specific progenitors revealed major gating difficulties, indicating that further improvements are necessary. In an analysis of more than 600 patients undergoing mobilization and harvest of blood progenitors, with about 500 patients autog...
- Published
- 1999
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30. Third Generation Oral Contraceptives and Heritable Thrombophilia as Risk Factors of Non-fatal Venous Thromboembolism
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Gunnar Lauge Nielsen, Flemming Hald Steffensen, John Bæch, Henrik Toft Sørensen, Jørn Olsen, Henrik Gregersen, and Birthe Søgaard Andersen
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Gynecology ,medicine.medical_specialty ,biology ,business.industry ,Obstetrics ,Factor V ,Case-control study ,Hematology ,Odds ratio ,medicine.disease ,Thrombophilia ,Desogestrel ,Epidemiology ,biology.protein ,Coagulopathy ,medicine ,cardiovascular diseases ,Risk factor ,business ,medicine.drug - Abstract
SummaryThird generation oral contraceptives (OCs) are apparently stronger risk factors for venous thromboembolism (VTE) than other OCs, however, the increased risk may be due to confounding by indication related to differences in prescription behaviour.We estimated the risk of VTE associated with use of OCs with and without the presence of Factor V Leiden mutation, protein C-, protein S- or antithrombin deficiency.Sixty-seven cases with VTE were compared with 134 controls. The risk of VTE in the presence of thrombophilia was of the same magnitude for third generation OC users as for users of other OCs; OR: 52.5 (95% CI: 3.7-738.1) and OR: 63.3 (95% CI: 6.2-648.4), respectively.It is unlikely that confounding by indication entirely explains the risk of VTE associated with third generation OCs since the combined effect exceeds what could be explained if this source of error was the only determinant of the association.
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- 1998
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31. Cell of origin associated classification of B-cell malignancies by gene signatures of the normal B-cell hierarchy
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Michael Gaihede, Karen Dybkær, Marie-Louise M. Grønholdt, Hans Erik Johnsen, Frank Jensen, Kim Steve Bergkvist, Julie Støve Bødker, Alexander Schmitz, Martin Agge Nørgaard, Preben Johansen, Martin Bøgsted, Steen Møller Hansen, Malene Krag Kjeldsen, and John Bæch
- Subjects
Cancer Research ,Pathology ,medicine.medical_specialty ,Lymphoma, B-Cell ,Cell of origin ,Biology ,Immunophenotyping ,medicine ,Centroblasts ,Leukemia, B-Cell ,Humans ,Multiple myeloma ,B cell ,B-Lymphocytes ,Models, Statistical ,Gene Expression Profiling ,Hematology ,medicine.disease ,Flow Cytometry ,Microarray Analysis ,Lymphoma ,Gene expression profiling ,medicine.anatomical_structure ,Oncology ,Cancer cell ,Bone marrow ,Lymphoma, Large B-Cell, Diffuse ,Multiple Myeloma ,Transcriptome - Abstract
Recent findings have suggested biological classification of B-cell malignancies as exemplified by the "activated B-cell-like" (ABC), the "germinal-center B-cell-like" (GCB) and primary mediastinal B-cell lymphoma (PMBL) subtypes of diffuse large B-cell lymphoma and "recurrent translocation and cyclin D" (TC) classification of multiple myeloma. Biological classification of B-cell derived cancers may be refined by a direct and systematic strategy where identification and characterization of normal B-cell differentiation subsets are used to define the cancer cell of origin phenotype. Here we propose a strategy combining multiparametric flow cytometry, global gene expression profiling and biostatistical modeling to generate B-cell subset specific gene signatures from sorted normal human immature, naive, germinal centrocytes and centroblasts, post-germinal memory B-cells, plasmablasts and plasma cells from available lymphoid tissues including lymph nodes, tonsils, thymus, peripheral blood and bone marrow. This strategy will provide an accurate image of the stage of differentiation, which prospectively can be used to classify any B-cell malignancy and eventually purify tumor cells. This report briefly describes the current models of the normal B-cell subset differentiation in multiple tissues and the pathogenesis of malignancies originating from the normal germinal B-cell hierarchy.
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- 2013
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32. [Primary autoimmune neutropenia in children]
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Kaspar René, Nielsen, Merete Debois, Kølbæk, Kirsten, Høj, John, Baech, and Bent Windelborg, Nielsen
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Diagnosis, Differential ,Neutropenia ,Child, Preschool ,Humans ,Infant ,Child ,Autoimmune Diseases - Abstract
Primary autoimmune neutropenia (AIN) is characterised by severe neutropenia and the presence of granulocyte reactive autoantibodies. The pathogenesis of the disease remains unknown and the disease is believed to be underdiagnosed. AIN occurs predominantly at the age of 6-24 months and despite severe neutropenia the symptomatology covers mainly benign infections. Serious bacterial infections might occur and some patients thus may benefit from treatment with prophylactic antibiotics or granulocyte growth factor. Spontaneous remission usually occurs within 30 months from the time of diagnosis.
- Published
- 2011
33. Inherited Inflammatory Response Genes Are Associated with B-Cell Non-Hodgkin’s Lymphoma Risk and Survival
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Mette Dahl Bendtsen, Julie Stoeveve Boedker, John Bæch, Rudi Steffensen, Hans Erik Johnsen, Alexander Schmitz, Thure Mors Haunstrup, Kaspar René Nielsen, Kim Steve Bergkvist, Maria Rodrigo-Domingo, Martin Boeøgsted, Preben Johansen, and Karen Dybkaeær
- Subjects
Male ,Risk ,medicine.medical_specialty ,Genotype ,Science ,Biology ,Polymorphism, Single Nucleotide ,Linkage Disequilibrium ,immune system diseases ,hemic and lymphatic diseases ,Molecular genetics ,Genetic variation ,Odds Ratio ,medicine ,Humans ,Allele ,skin and connective tissue diseases ,Lymphoma, Follicular ,Alleles ,B cell ,Survival analysis ,Aged ,Proportional Hazards Models ,Multidisciplinary ,Haplotype ,Interleukin-4 Receptor alpha Subunit ,Middle Aged ,Interleukin-10 Receptor beta Subunit ,medicine.disease ,Survival Analysis ,Interleukin-10 ,Non-Hodgkin's lymphoma ,medicine.anatomical_structure ,Haplotypes ,Immunology ,Cancer research ,Medicine ,Female ,Interleukin-4 ,Lymphoma, Large B-Cell, Diffuse ,sense organs ,Transcriptome ,Research Article - Abstract
BACKGROUND: Malignant B-cell clones are affected by both acquired genetic alterations and by inherited genetic variations changing the inflammatory tumour microenvironment.METHODS: We investigated 50 inflammatory response gene polymorphisms in 355 B-cell non-Hodgkin's lymphoma (B-NHL) samples encompassing 216 diffuse large B cell lymphoma (DLBCL) and 139 follicular lymphoma (FL) and 307 controls. The effect of single genes and haplotypes were investigated and gene-expression analysis was applied for selected genes. Since interaction between risk genes can have a large impact on phenotype, two-way gene-gene interaction analysis was included.RESULTS: We found inherited SNPs in genes critical for inflammatory pathways; TLR9, IL4, TAP2, IL2RA, FCGR2A, TNFA, IL10RB, GALNT12, IL12A and IL1B were significantly associated with disease risk and SELE, IL1RN, TNFA, TAP2, MBL2, IL5, CX3CR1, CHI3L1 and IL12A were, associated with overall survival (OS) in specific diagnostic entities of B-NHL. We discovered noteworthy interactions between DLBCL risk alleles on IL10 and IL4RA and FL risk alleles on IL4RA and IL4. In relation to OS, a highly significant interaction was observed in DLBCL for IL4RA (rs1805010) * IL10 (rs1800890) (HR = 0.11 (0.02-0.50)). Finally, we explored the expression of risk genes from the gene-gene interaction analysis in normal B-cell subtypes showing a different expression of IL4RA, IL10, IL10RB genes supporting a pathogenetic effect of these interactions in the germinal center.CONCLUSIONS: The present findings support the importance of inflammatory genes in B-cell lymphomas. We found association between polymorphic sites in inflammatory response genes and risk as well as outcome in B-NHL and suggest an effect of gene-gene interactions during the stepwise oncogenesis.
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- 2015
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34. Technical aspects and clinical impact of hematopoietic progenitor subset quantification
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Hans Erik Johnsen and John Baech
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Oncology ,Subset Analysis ,medicine.medical_specialty ,medicine.medical_treatment ,Cytological Techniques ,CD34 ,Hematopoietic stem cell ,Transfusion medicine ,Antigens, CD34 ,Cell Biology ,Hematopoietic stem cell transplantation ,Leukapheresis ,Cell Separation ,Biology ,Hematopoietic Stem Cells ,medicine.anatomical_structure ,Internal medicine ,Immunology ,Cytogenetic Analysis ,medicine ,Molecular Medicine ,Humans ,Bone marrow ,Stem cell ,Developmental Biology - Abstract
As high-dose therapy for malignancies is now being applied to newly diagnosed patients as adjuvant therapy, it has become a requirement that quality and safety assessment of hematopoietic stem cell grafts be evidence-based. This process has developed a new institution in medicine, the stem cell laboratory. In most cases this speciality has evolved from or within hematological research laboratories. However, the increased routine technologies applied in quality evaluation, ex vivo manipulation and safety assessment in stem cell handling naturally places this activity in transfusion medicine. Multiparametric flow cytometry can identify progenitor subsets in normal human bone marrow and peripheral blood, and such subset quantification has been used retrospectively to predict three-lineage engraftment following high-dose therapy for malignancies. Published single center data have suggested an impact on clinical outcome, and a standardized technique for subset enumeration needs to be established before prospective multicenter trials can be initiated to document the prognostic value of such quality assessment in autografting. Based on experiences of CD34 enumeration, which we consider to be the first step in quality assessment of hematopoietic stem cell grafts, this review discusses flow cytometry subset identification by lineage-specific differentiation markers, stromal-dependent adherence molecules, and regulatory growth factor receptors from a technical point of view. The aim of this review is:To recommend a simple method based on the experiences of the Nordic workshop III on subset identification; To present new molecular genetic-based methods for future use in quality assessment; and To propose new endpoints necessary for validation of the likely clinical impact of subsets in prospective trials. As sample differences between blood and marrow result in technical difficulties, this review only focuses on the methodology of identifying subsets in blood and leukapheresis products. Methods for subset analysis in diagnostic bone marrow samples will be covered in a forthcoming review.
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- 2000
35. Promoter polymorphisms in the chitinase 3-like 1 gene influence the serum concentration of YKL-40 in Danish patients with rheumatoid arthritis and in healthy subjects
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Julia S. Johansen, Merete Lund Hetland, Mette Nyegaard, Kaspar René Nielsen, Sophine B. Krintel, Hans Erik Johnsen, Søren Lundbye-Christensen, Rudi Steffensen, John Bæch, and Martin Boegsted
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Adult ,Male ,musculoskeletal diseases ,medicine.medical_specialty ,Linkage disequilibrium ,Genotype ,Denmark ,Immunology ,Single-nucleotide polymorphism ,Biology ,Autoantigens ,Polymorphism, Single Nucleotide ,CHI3L1 ,Arthritis, Rheumatoid ,Young Adult ,Adipokines ,Rheumatology ,CHI3L1 Gene ,Risk Factors ,Lectins ,Internal medicine ,medicine ,Humans ,Immunology and Allergy ,Genetic Predisposition to Disease ,Chitinase-3-Like Protein 1 ,Allele ,Promoter Regions, Genetic ,Aged ,Aged, 80 and over ,Middle Aged ,medicine.disease ,Rheumatoid arthritis ,Female ,Research Article - Abstract
Introduction The present study investigates the association between single nucleotide polymorphisms (SNPs) in the chitinase 3-like 1 (CHI3L1) gene and serum concentrations of YKL-40 in Danish patients with rheumatoid arthritis (RA) and healthy controls as well as the association with RA in the Danish population. The CHI3L1 gene is located on chromosome 1q32.1 and encodes the YKL-40 glycoprotein. YKL-40 concentrations are elevated in the serum of patients with RA compared to healthy subjects, and YKL-40 has been suggested to be an auto-antigen and may play a role in development of RA and in inflammation. Methods Eight SNPs in the CHI3L1 gene and promotor were genotyped in 308 patients with RA and 605 controls (healthy blood donors) using TaqMan allele discrimination assays. Serum concentrations of YKL-40 were determined by an enzyme-linked immunosorbent assay (ELISA). Results We found significant association between the serum concentrations of YKL-40 and polymorphism in the CHI3L1 gene among both patients with RA and controls. The g.-131(C > G) polymorphism (rs4950928) was most strongly associated with age adjusted serum concentrations of YKL-40 in patients with RA (P < 2.4e-8) and controls (P < 2.2e-16). No significant allelic- or genotypic association with RA was found in this Danish cohort. Conclusions We suggest that the g.-131(C > G) promoter polymorphism has a substantial impact on serum concentrations of YKL-40 in patients with RA and healthy subjects. However, the polymorphism does not seem to confer risk to RA itself. The effect of CHI3L1 polymorphism on clinical outcome or the response to treatment in patients with RA remains to be investigated.
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- 2011
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36. Failure of metal-backed patellar arthroplasty. 47 AGC total knees followed for at least 1 year
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John Bæch and Hakon Kofoed
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musculoskeletal diseases ,Male ,Reoperation ,medicine.medical_specialty ,medicine.medical_treatment ,Osteoarthritis ,Prosthesis ,Total knee ,medicine ,Humans ,Orthopedics and Sports Medicine ,Metal backed ,Prospective Studies ,Prospective cohort study ,Aged ,Aged, 80 and over ,business.industry ,Arthritis ,Patella ,Middle Aged ,musculoskeletal system ,medicine.disease ,Arthroplasty ,Surgery ,Prosthesis Failure ,Metals ,Orthopedic surgery ,Female ,business ,Knee Prosthesis ,human activities - Abstract
A prospective series of 47 total knee arthroplasties in 44 patients with gonarthrosis were followed for at least 1 year to detect patellar complications. In five knees the metal-backed patellar component failed, in one knee the cement fractured, and in one knee there was a spontaneous fracture of the patella. We regard this failure rate as unacceptable.
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- 1991
37. Perineal seeding of prostatic carcinoma after Trucut biopsy
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D Raahave, H Göte, and John Bæch
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Male ,Pathology ,medicine.medical_specialty ,Urology ,Neoplasm Seeding ,Adenocarcinoma ,Perineum ,Metastasis ,Prostate ,Biopsy ,Carcinoma ,Medicine ,Humans ,False Negative Reactions ,Aged ,medicine.diagnostic_test ,business.industry ,Biopsy, Needle ,nutritional and metabolic diseases ,food and beverages ,Cancer ,Prostatic Neoplasms ,medicine.disease ,medicine.anatomical_structure ,Radiology ,business - Abstract
Perineal seeding of cancer of the prostate is a rare complication after transperineal prostatic biopsy. In the present case the biopsy responsible for the seeding was false-negative, but microscopy of the perineal lesion showed a differentiated adenocarcinoma.
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- 1990
38. Frequency of HLA-B27 subtypes in a Danish population and in Danish patients with ankylosing spondylitis
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N. Grunnet, Søren Schmidt-Olsen, Kim Varming, Rudi Steffensen, Casper Jersild, and John Bæch
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musculoskeletal diseases ,Danish population ,Denmark ,Immunology ,Biochemistry ,law.invention ,Danish ,Gene Frequency ,law ,Genetics ,medicine ,Humans ,Immunology and Allergy ,Spondylitis, Ankylosing ,Allele frequency ,Polymerase chain reaction ,HLA-B27 Antigen ,Ankylosing spondylitis ,HLA-B27 ,business.industry ,General Medicine ,medicine.disease ,language.human_language ,language ,business - Abstract
Polymerase chain reaction in combination with sequence-specific oligonucleotide probes were used to analyze nine HLA-B27 subtypes among 51 healthy HLA-B27 positive Danish blood donors and 30 Danish HLA-B27 positive patients with ankylosing spondylitis (AS). In the group of healthy Danes we found two subtypes, B*2705 (90.2%) and B*2702 (9.8%), however, among the AS patients only the B*2705 subtype was detected. We did not find a significant evidence for associations between AS and a particular HLA-B27 subtype in a Danish population.
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- 1996
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39. Quality of treatment response in the Danish national acute leukaemia registry and impact on prognosis
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Andreas Kiesbye Øvlisen, Anders Oest, Hans Erik Johnsen, Mette Dahl Bendtsen, John Bæch, Lynggaard, L. S., Mortensen, T. B., Preben Johansen, Schollkopf, C., Thomassen, J. Q., and Marianne Tang Severinsen
40. Quantitation of megakaryocytic progenitors in apheresis products by flow cytometry and real time PCR
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Eva Birgitte Leinøe, Kaspar Renÿ Nielsen, John Bæch, Rudi Nora Steffensen, Karen Dybkaer, Martin Bøgsted, and Hans Erik Johnsen
41. Usefulness of vital cryopreserved cell suspensions for phenotypic and gene expression studies within the normal B-cell hierarchy
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Alexander Schmitz, Anders Ellern Bilgrau, Simon Mylius Rasmussen, Kim Steve Bergkvist, Anette Mai Tramm, John Bæch, Chris Ladefoged Jacobsen, Michael Gaihede, Malene Krag Kjeldsen, Julie Støve Bødker, Karen Dybkaer, Martin Bøgsted, and Hans Erik Johnsen
42. A Documented Technique for Genetic Studies of Small Discrete Populations from FACS Sorted Normal and Malignant B Cells
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Alexander Schmitz, Kim Steve Bergkvist, Martin Perez-Andres, Julie Støve Bødker, Michael Gaihede, Martin Agge Nørgaard, John Bæch, Marie-Louise Grønholdt, Frank Svendsen Jensen, Jannie Lassen Pedersen, Martin Bøgsted, Karen Dybkaer, Mette Nyegaard, and Hans Erik Johnsen
43. Generation of a documented technique for genetic studies of small discrete populations of normal and malignant B cells
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Kim Steve Bergkvist, Alexander Schmitz, Martin Perez, Julie Støve Bødker, Michael Gaihede, Martin Agge Nørgaard, John Bæch, Marie-Louise Grønholdt, Frank Svendsen Jensen, Jannie Lassen Pedersen, Martin Bøgsted, Karen Dybkaer, Mette Nyegaard, and Hans Erik Johnsen
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