1. 赤水乌骨鸡 PPP3CA 基因多态性与生长性状关联分析.
- Author
-
周 迪, 蒋桂荣, 欧仁, 谢艳, 李波, 王燕, 杨蓉, 李俊, 沈银, 敖叶, and 王昌毅
- Subjects
- *
LOCUS (Genetics) , *CHICKENS , *STRUCTURAL bioinformatics , *TERTIARY structure , *BODY size , *GENE frequency , *MISSENSE mutation - Abstract
[Objective] The effect of PPP3CA gene on growth traits of the Chishui black-bone silky fowl was explored, which provided the basis for genetic improvement and molecular breeding of Chishui black-bone silky fowl. [Method] All exons of PPP3CA gene of Chishui black-bone silky fowl were screened by PCR amplification and direct sequencing.RNAfold WebServer and Structural Bioinformatics Group were used to predict the secondary and tertiary structure of PPP3CA protein, and to calculate the gene frequency, genotype frequency, homozygosity, heterozygosity, number of effective alleles and polymorphic information content.The Hardy-Weinberg equilibrium state was analyzed, and the correlation between the genotypes corresponding to different polymorphic loci and the body size index were analyzed by SPSS. [Result] Three missense mutation sites (C29T,T50C and T63G) were found at exon 7,and one missense mutation site (G720A) was found at exon 16.The χ² test showed that all the above loci deviated from Hardy-Weinberg equilibrium.CC type with C29T mutation significantly increased body weight, pelvic width and chest circumference.CC type with T50C mutation significantly increased body weight, tibial length and keel length.The TT type at T63G site significantly increased the tibial length and keel length.The AA type at G720A significantly increased the tibial length and keel length, and the CC type significantly increased the body oblique length.The CC type at C29T,CC type at T50C, TT type at T63G and AA type at G720A were all dominant genotypes, but the C29T and T50C base mutations were unfavorable mutations, while the T63G and G720A base mutations were favorable mutations, and G720A was more conducive to the growth of black-bone silky fowl, which could be used as a reference site for molecular marker assisting breeding of Chishui black-bone silky fowl. [Conclusion] The study is the first to investigate the correlation between PPP3CA gene and chicken growth traits, and finds four polymorphic loci in the exon of PPP3CA gene in domestic chickens, indicating that PPP3CA gene has a certain effect on growth traits of Chishui black-bone silky fowl, and can be used as a reference site for molecular marker assisting breeding of Chishui black-bone silky fowl.The results of the study can provide reference for genetic improvement and breeding of Chishui black-bone silky fowl in the future, and lay a foundation for further research on PPP3CA gene of chicken. [ABSTRACT FROM AUTHOR]
- Published
- 2023
- Full Text
- View/download PDF